Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00451 ATGGCCTCTGTTTCTTTCACTCTCTTTTCCTTTCTCCCTTTTCTCTGTGTCATCGTAATCATATCACAGAGCAGTGCTCAAACACCCTGTGATAACAGCAAAGGAAACTACACAATAAACAGCACCTATCACAACAACCTCAACACCCTTTTATCCAGCTTCTCTTCCCACACACAAATCAACTATGGTTTCTACAATTTCTCATATGGCCAAGGGGAGGACCAAGTATTCGCCATTGGGCTCTGCAGAGGCGATCTTAAACCCGATGAGTGCCTTAAATCTCTCAATGATTCCAGAGTGTCTCTGGCAGCGAGTTGTCCAAACCAGAAGGAGGCCATTACGTGGACGGTAGAGTGCATGTTGCGGTACACTAACCGCTCCATATTTGGCGTTATGGAAAACCAACCTACGAATGATAACTACTACGATTTAAATGTAACGGGTTCGGTGGCAGAATTCAATGCAGCGCTGGAGAGCTTGATGAGGAATCTAACACGCATAGCTGCATCTGGTGACTCTCGCCTTAAGTATGCCACTGGCAGTACTCCTGCTCCAAATTTTCAAACCATATACGGTCAGGCACAGTGTACTCCTGATCTGTCATCCGAAGATTGCACTAAGTGCTTGGATGAAGCTGTCTCAAAAATCCCACAGTGCTGTAGTGGGAAGGCTGGAGGCAATGTTGTAAAACCCAGTTGTAGAATTAGATTTGACCCTTATATCTTCTATGGACCTACGCTGAAACTAGACCCAGATGTGCCACCATCATCGTCCACCAACAACACTTCTTCTTCACGAGGAAAGAGCAACACAGCACGGACTATCATCGTCATAGTAGTGCCAGTTGCTTGTGTTGTTTTGCTGCTCGCTCTTCTCTGCATCTATTTAAGCCTAAGGAAACAAAGAAAAAAAATTGAATTTGAAAGAGAAGAAGAAAGTGATGAAGATGAAGTCGCATTTACTGAGTCATTGCAATACAACTTCAACACCATACGTGTTGCTACAAATGAATTCGCTGATTCTAATAAACTTGGACAGGGCGGGTTTGGAGCTGTTTACAAAGGTCAGCTTTCCAATGGGCAAGAGATTGCTGTCAAAAGATTGTCAAGAGATTCTGGGCAAGGGGATTTGGAATTTAAGAATGAAGTGCAATTAGTGGCCAAGCTTCAGCATCGAAATTTAGTTAGGCTACTTGGCTTCGGCCTGGAAGGAAGAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTCATATTTGATCCAACCATGAAACCTCAATTGGACTGGCAAATGCGCTACAAAATCATTAAAGGTATTGCTCGAGGCATTCTCTACCTTCACGAAGATTCTAGACTACGGATTATACATCGTGATCTTAAAGCAAGTAATATTCTCTTGGACAGAGAGATGAATCCAAAGATAGCAGATTTTGGTATGGCAAGATTAGTTTTAATGGATCAAACTCAAATAAATACGAGTAGAATTGTTGGAACTTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCAGCAAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAACAGTGGAATCAATAATGGGGAGAGTATGGAGGATCTGCTAAGCTTCGCTTGGAGAAGCTGGAAGGAGGGGAAGGCTATAAATATTGTAGATCCATCACTCAACAGCAATTCACGGAATGAAATGCTGAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATTTAGTTGACAGACCAACCATGGCTACCATTGTACTGATGCTTAATAGCCATTCTCTGAGTCTCCCTATTCCTGCAGAACCTGCATTTTATATGAACAGTAGAACTAGAAGCTTTCCAGAGATGCAGTCATGGGAGTATAATTCAAGGGAAAGAGGATCAAGTGAACCGATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTATACCCTCGCTAG 2013 0.4203 MASVSFTLFSFLPFLCVIVIISQSSAQTPCDNSKGNYTINSTYHNNLNTLLSSFSSHTQINYGFYNFSYGQGEDQVFAIGLCRGDLKPDECLKSLNDSRVSLAASCPNQKEAITWTVECMLRYTNRSIFGVMENQPTNDNYYDLNVTGSVAEFNAALESLMRNLTRIAASGDSRLKYATGSTPAPNFQTIYGQAQCTPDLSSEDCTKCLDEAVSKIPQCCSGKAGGNVVKPSCRIRFDPYIFYGPTLKLDPDVPPSSSTNNTSSSRGKSNTARTIIVIVVPVACVVLLLALLCIYLSLRKQRKKIEFEREEESDEDEVAFTESLQYNFNTIRVATNEFADSNKLGQGGFGAVYKGQLSNGQEIAVKRLSRDSGQGDLEFKNEVQLVAKLQHRNLVRLLGFGLEGRERLLVYEFVPNKSLDYFIFDPTMKPQLDWQMRYKIIKGIARGILYLHEDSRLRIIHRDLKASNILLDREMNPKIADFGMARLVLMDQTQINTSRIVGTYGYMAPEYAMHGQFSAKSDVFSFGVLILEIVSGQKNSGINNGESMEDLLSFAWRSWKEGKAINIVDPSLNSNSRNEMLRCIHIGLLCVQENLVDRPTMATIVLMLNSHSLSLPIPAEPAFYMNSRTRSFPEMQSWEYNSRERGSSEPILKSAQESENEASITELYPR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00451 670 MobiDBLite consensus disorder prediction 639 670 - -
Vian3g00451 670 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
Vian3g00451 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vian3g00451 670 Gene3D Phosphorylase Kinase; domain 1 299 413 - -
Vian3g00451 670 ProSiteProfiles Gnk2-homologous domain profile. 134 242 IPR002902 -
Vian3g00451 670 ProSiteProfiles Gnk2-homologous domain profile. 25 128 IPR002902 -
Vian3g00451 670 Gene3D Transferase(Phosphotransferase) domain 1 414 615 - -
Vian3g00451 670 SMART serkin_6 338 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00451 670 SUPERFAMILY Protein kinase-like (PK-like) 324 640 IPR011009 -
Vian3g00451 670 MobiDBLite consensus disorder prediction 639 663 - -
Vian3g00451 670 Gene3D - 25 127 IPR038408 -
Vian3g00451 670 Gene3D - 136 242 IPR038408 -
Vian3g00451 670 Pfam Protein tyrosine and serine/threonine kinase 342 606 IPR001245 GO:0004672|GO:0006468
Vian3g00451 670 CDD STKc_IRAK 344 609 - -
Vian3g00451 670 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vian3g00451 670 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 128 - -
Vian3g00451 670 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 667 - -
Vian3g00451 670 FunFam cysteine-rich receptor-like protein kinase 10 414 615 - -
Vian3g00451 670 ProSiteProfiles Protein kinase domain profile. 338 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00451 670 Pfam Salt stress response/antifungal 151 238 IPR002902 -
Vian3g00451 670 Pfam Salt stress response/antifungal 30 125 IPR002902 -
Vian3g00451 670 FunFam Cysteine-rich receptor-like protein kinase 10 299 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00451 Vian-Chr3 4252785 4255845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00451 34 670 Receptor kinase-like Gene Family AT4G21410 49.695 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian3g00451 PK_Tyr_Ser-Thr 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00451 - - gmx:113000777 981.089