Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00450 ATGACTGCAATTTTCTGTTTGCTTGGTCTCTGGGCCACCATAATCGTATCGCATGCAAGCGCTCAGACACCATTCTGTGATAACAACAAAGGCAACTACACAGTCAACAGCACTTATGACAATAACCTCAACACCCTCCTATCCAGTTTCTCTACCCACGCCCAAGTGAACTACGGTTTCTACAATTTCTCACATGGCCAAGGCCTAGACAAAGCATACGCCATTGGGATCTGCAGAGGAGACCTTACACCGGAAGAATGCCTCAAATGCCTCAACGAAAACGGAGCGGCTCTCACAAAAAACTGTCCAAACCAAAAAGAGGCAATTGTGTGGGATGGTGAATGCTCCTTGCGTTACTCTAACCGCTCCATATTTGGCCTCATGGATAATCAACCTACGGTGCTACTCTATTACACGTTGGAGGTAAGGGGTTCGATTGAGCAATTCAACGCAAAGCTTGAAAGCTTGATGAGGAATCTAACACGCATAGCTGCGTCTGGTGACTCTCGTCGTAAGTATGCTACAGGCAGTGCACCTGCTCCAGATTTTCAAACCATATACGGTTACACGCAGTGCTCGCCTGATTTGTCTTCCGAGGATTGCTCTAAGTGTTTGGAAGAATCTATCTCAAAAATCCCAGATTGCTGTAAGGGCAAGGCTGGAGGCAATGTTTTGAAGCCCAGTTGTAGAATTAGATTTGACCCTTATATATTCTATGGACCTACACTCAAGTTAGACCCAGATGCACCACCACCACCAACCACCCCACCACCATCTCGCTTCCCCAACAACACTTCTCAAGGAAACAGCAACACGTCACGAACCATCATCGCTGTAGCAGTGCCAGTTGCTGGTGTTGTTTTAGCGCTCAGTCTTTTTTGCATATATCTGATAGTTAGGAAGCCAAGAAAACAAATTGAAATTGGAAAAGAAGAGGATAGTGAGGATGAAGATGAAGTTACATTTACTGAGTCATTGCAATTCAAATTTGAAACCATCCGAATTGCAACAAATGAATTTGCTGATTCTAATAAGCTTGGACAGGGCGGGTTTGGAGCTGTATACAAAGGTCAGCTTTCCAATGGACAAGGAATTGCTGTGAAAAGGTTGTCAAGTAATTCTGGGCAAGGAGATACGGAGTTCAAGAATGAAGTGCTATTATTGGCCAAACTTCAACACCGAAATTTAGTGAGGCTGATTGGTTTCTGTTTGGAAGGAAGTGAAAGGCTCCTTATCTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTCATATTTGATCCAATAAAGAAAACACAGTTGGATTGGCAAATGCGCTACCAAATAATTAGAGGTATTACAAAAGGCATTCTCTATCTCCATGAGGATTCTCAACTACGAATTATACATCGAGATCTAAAAGCAAGCAACATTCTCTTGGACGAAAACATGTATCCTAAGATATCAGATTTTGGGATGGCAAGATTGTTTCAGGTGGATCAGACTCAAGCAAATACACACAGAGTTGTTGGAACCTATGGATATATGGCTCCTGAGTATGCAGTATATGGTCATTTTTCAGCAAAATCAGATGTTTTTAGTTATGGTGTAATGGTTCTTGAGATTGTAAGTGGGCGAAAAAGTATTGGTGCTCGTCATGGGGAGACAGTGGAGGATCTATTGAGCTTTACATGGAAAAACTGGAAGAATGGAAATATTACAAATATTGTAGACCCCACATTAATGAAGGGTTCTCGAAATGAAATGATAAGATGTATCCACATTGGGTTACTATGTGTTCAGGAAGATATGGCCAGCAGACCAACCATGGCTTCTGTAGTACTCATGCTTAATAGTCATTCTATCTCTCTCCCAATACCTTCAGAACCTGCCTTTGTTGTCAATAGTAGCACAAGAAGCTATCCAAACATGTTCTCGGGAGAGCTTAATTCAGAGAAAACAGGATCGACTGAATCCACGAATAAACCAGCTCAATCTTCGGTAAATGAGGTTTCAATTACTGAGTTATACCCTCGCTAG 2019 0.42 MTAIFCLLGLWATIIVSHASAQTPFCDNNKGNYTVNSTYDNNLNTLLSSFSTHAQVNYGFYNFSHGQGLDKAYAIGICRGDLTPEECLKCLNENGAALTKNCPNQKEAIVWDGECSLRYSNRSIFGLMDNQPTVLLYYTLEVRGSIEQFNAKLESLMRNLTRIAASGDSRRKYATGSAPAPDFQTIYGYTQCSPDLSSEDCSKCLEESISKIPDCCKGKAGGNVLKPSCRIRFDPYIFYGPTLKLDPDAPPPPTTPPPSRFPNNTSQGNSNTSRTIIAVAVPVAGVVLALSLFCIYLIVRKPRKQIEIGKEEDSEDEDEVTFTESLQFKFETIRIATNEFADSNKLGQGGFGAVYKGQLSNGQGIAVKRLSSNSGQGDTEFKNEVLLLAKLQHRNLVRLIGFCLEGSERLLIYEFVPNKSLDYFIFDPIKKTQLDWQMRYQIIRGITKGILYLHEDSQLRIIHRDLKASNILLDENMYPKISDFGMARLFQVDQTQANTHRVVGTYGYMAPEYAVYGHFSAKSDVFSYGVMVLEIVSGRKSIGARHGETVEDLLSFTWKNWKNGNITNIVDPTLMKGSRNEMIRCIHIGLLCVQEDMASRPTMASVVLMLNSHSISLPIPSEPAFVVNSSTRSYPNMFSGELNSEKTGSTESTNKPAQSSVNEVSITELYPR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00450 672 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vian3g00450 672 MobiDBLite consensus disorder prediction 637 672 - -
Vian3g00450 672 FunFam Cysteine-rich receptor-like protein kinase 10 133 238 - -
Vian3g00450 672 CDD STKc_IRAK 346 611 - -
Vian3g00450 672 ProSiteProfiles Gnk2-homologous domain profile. 130 238 IPR002902 -
Vian3g00450 672 ProSiteProfiles Protein kinase domain profile. 340 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00450 672 MobiDBLite consensus disorder prediction 244 269 - -
Vian3g00450 672 SMART serkin_6 340 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00450 672 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Vian3g00450 672 MobiDBLite consensus disorder prediction 637 666 - -
Vian3g00450 672 FunFam cysteine-rich receptor-like protein kinase 10 416 617 - -
Vian3g00450 672 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 671 - -
Vian3g00450 672 Gene3D Transferase(Phosphotransferase) domain 1 416 617 - -
Vian3g00450 672 SUPERFAMILY Protein kinase-like (PK-like) 325 642 IPR011009 -
Vian3g00450 672 FunFam Cysteine-rich receptor-like protein kinase 10 301 415 - -
Vian3g00450 672 MobiDBLite consensus disorder prediction 245 260 - -
Vian3g00450 672 Coils Coil 146 166 - -
Vian3g00450 672 Gene3D - 138 238 IPR038408 -
Vian3g00450 672 Gene3D - 20 123 IPR038408 -
Vian3g00450 672 Pfam Protein tyrosine and serine/threonine kinase 344 608 IPR001245 GO:0004672|GO:0006468
Vian3g00450 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vian3g00450 672 Gene3D Phosphorylase Kinase; domain 1 303 415 - -
Vian3g00450 672 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Vian3g00450 672 Pfam Salt stress response/antifungal 147 234 IPR002902 -
Vian3g00450 672 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 19 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00450 Vian-Chr3 4247424 4251088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00450 29 672 Receptor kinase-like Gene Family AT4G21410 48.706 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian3g00450 PK_Tyr_Ser-Thr 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00450 - - gmx:100791582 956.436