Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00448 ATGGCTCAGCTTTCGCCAAGGCTACTTTACTTTCTCTTTAGTCTTCTGATAACAAATTCTATATCTCAAGTTACAGCAGACAACACTACACAAAACTTCCACTACTTCTGTGATCATGATAACGATAGAGGATACTACACGGCCAACAGCACCTACCACACCAACCTCAACACCCTTTTGTCCACTCTCGTTTCCAATAAAGAAATCTATTACGGTTTCTACAATTTCACAAATGGCGAAAACACTGATAAAGTGTACGCCATTGGGGTGTGTAGAGGAGATGTTGAGCCAGAGAACTGCCGCACATGCCTCAACGGTTCCAGGACCAATCTCACTGAACTTTGTCCAAACCGAAAGGAAGCAATTGGTTGGTACGAGGATGAGCAGTGTATGTTGCGCTACTCAGACCGCAATATATTCGGCCTTATGGAAATTGGACCAGCTTTTTATGCTAACAATGACAAAAATGCATCGGATTTGGATGAGTTCAATGAAGATGTCAACACCTTGCTACGTAACCTAAGCGGCATAGCTGCATCAGGTGACTCTCGTGTTAAGTATGCTGCAGATGGTATATCATCAGGTTCAAAGGTCATATATGGTCTAGTTCAGTGCACACCGGACTTGGAAGAGTCAGAGTGCGCTGATTGCTTGTCTCAGTCCATTGAACGTATCCCAATAGATTGCTGTAAAGACAAGATAGGTGGTAGGGTTGTTAGACCGAGTTGTAATATGAGGTTCGAAACCTCCTTCAAGTTCTATGGAGATCCAGCATTTGTACCACCATCTCCTCCTCCTTCCACCACGGGAAAGAGCAACGCAACTATCATCGTCATAGCGGTAACAGTACCAGTTGTTGTAATTGTTTTCGCGGTGCTTATTTTTATCTACATTCTTTTAATAGCGAGGAAGCCACGGAAAAAGTTTGAAATTCAACAAGAAGAACTAGATGATGATGATGGTGATGGAATTGACGCTTCTGAGCCATTGCAAATCAGATTTAACATGATACGAGATGCTACAAATGACTTTTCTGATTCTAATAAACTCGGAGAGGGTGGATTTGGAGCTGTTTACAGGGGTACGCTACCTAATGGACAAGAGATTGCCGTCAAAAGGTTGTCAGCTAATTCTAGACAAGGAGATGCAGAGTTCAAGAATGAGGTGCTTTTAGTGGCCAAACTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTCTGGAAGGAAGAGAAAAGCTACTTGTCTATGAATTTGTTCCAAATAAAAGCCTTGATTACTTCATATTTGATGAAACCAAGAGAGCACAATTAGATTGGGATAGGCGATTCAAAATCATTGCAGGTACTGCTCGAGGTATTCTCTACCTCCATCAAGATTCTCGATTGCGCATTATCCATCGTGATCTCAAAGCTGGTAACATTCTCTTAGACGAAGAGATGAACCCTAAGATAGCAGATTTTGGCTTGGCAAGGTTATTTGTTGTGGACCAAACTCATGAAGATACACAGAGAGTTGTTGGGACATATGGATATATGGCACCTGAGTATGCATTGCATGGACAGTTTTCAGAGAAGTCAGATGTTTTTAGTTTTGGTGTATTGATTCTTGAGATTGTAAGTGGCCAGAAAATCAGTAGCATTCAACATGGAGAGGAAACGGGAGATCTACGCGATATTGCATGGCGAAGTTGGAGGGAAGGAAGAGCAAGAAATATTGTAGATCCTACATTAAACAATGGTTCAGAAAGTGAAATAATGAGATGCGTCCATATTGGGTTACTGTGTGTTCAAGACAATGCAGCTGCGAGACCCACCATGGCTTCCGTTGTAGCCATGCTGAATAGTCATTCTTTCGGTCTTCAAGTACCTGTGGCACCTGCACTTTATGGGAATGCCATGTCTGGAATCTTTGCAGACATGCAGTTATGGGAGATTAATTCAGGGACGACAAGATCAAGAGAATCCACCAATAGATCAGACCAAGATTCCATCAATGAGGCTTCAATTACTGACCCATATCCTCGCTAG 2031 0.4225 MAQLSPRLLYFLFSLLITNSISQVTADNTTQNFHYFCDHDNDRGYYTANSTYHTNLNTLLSTLVSNKEIYYGFYNFTNGENTDKVYAIGVCRGDVEPENCRTCLNGSRTNLTELCPNRKEAIGWYEDEQCMLRYSDRNIFGLMEIGPAFYANNDKNASDLDEFNEDVNTLLRNLSGIAASGDSRVKYAADGISSGSKVIYGLVQCTPDLEESECADCLSQSIERIPIDCCKDKIGGRVVRPSCNMRFETSFKFYGDPAFVPPSPPPSTTGKSNATIIVIAVTVPVVVIVFAVLIFIYILLIARKPRKKFEIQQEELDDDDGDGIDASEPLQIRFNMIRDATNDFSDSNKLGEGGFGAVYRGTLPNGQEIAVKRLSANSRQGDAEFKNEVLLVAKLQHRNLVRLLGFCLEGREKLLVYEFVPNKSLDYFIFDETKRAQLDWDRRFKIIAGTARGILYLHQDSRLRIIHRDLKAGNILLDEEMNPKIADFGLARLFVVDQTHEDTQRVVGTYGYMAPEYALHGQFSEKSDVFSFGVLILEIVSGQKISSIQHGEETGDLRDIAWRSWREGRARNIVDPTLNNGSESEIMRCVHIGLLCVQDNAAARPTMASVVAMLNSHSFGLQVPVAPALYGNAMSGIFADMQLWEINSGTTRSRESTNRSDQDSINEASITDPYPR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00448 676 SMART serkin_6 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00448 676 FunFam Cysteine-rich receptor-like protein kinase 10 147 251 - -
Vian3g00448 676 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Vian3g00448 676 FunFam cysteine-rich receptor-like protein kinase 10 420 621 - -
Vian3g00448 676 Pfam Salt stress response/antifungal 155 249 IPR002902 -
Vian3g00448 676 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Vian3g00448 676 Gene3D Transferase(Phosphotransferase) domain 1 420 621 - -
Vian3g00448 676 Pfam Protein tyrosine and serine/threonine kinase 347 612 IPR001245 GO:0004672|GO:0006468
Vian3g00448 676 Gene3D Phosphorylase Kinase; domain 1 311 419 - -
Vian3g00448 676 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Vian3g00448 676 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 673 - -
Vian3g00448 676 FunFam Cysteine-rich receptor-like protein kinase 10 304 419 - -
Vian3g00448 676 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Vian3g00448 676 MobiDBLite consensus disorder prediction 650 676 - -
Vian3g00448 676 SUPERFAMILY Protein kinase-like (PK-like) 329 614 IPR011009 -
Vian3g00448 676 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 139 - -
Vian3g00448 676 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00448 676 Gene3D - 148 251 IPR038408 -
Vian3g00448 676 Gene3D - 32 138 IPR038408 -
Vian3g00448 676 CDD STKc_IRAK 350 615 - -
Vian3g00448 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00448 Vian-Chr3 4221732 4225451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00448 29 629 Receptor kinase-like Gene Family AT4G21410 49.219 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian3g00448 PK_Tyr_Ser-Thr 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00448 - - var:108324787 1280.77