Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00444 ATGTCGAAGAATAAAAAGTGTAGTTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCCAAGAAGAGTCATTTGCAAGTGACTTTCTCTAAACGTCGTTCGGGAGTGTTCAAGAAAGCCAGCGAACTTTGCACCCTCTGTGGGGTAGAGATCGCCATCGTCGTTTTCTCTCCTGCAGACAAGGCCTTCTCTTTTGGCCATCCAGAAGTTGAGTCCCTCATCGATCGCTACACCATGCGGAACCCTCCACAAGATTCCAGTGCGCAGCACCTCGTTGAGGCTCATCGAAATGCGAATGTTCGTGATCTCAACATGCAACTCACTCAGGTTTTTAACCTTCTGGAGATTGAAAAGAAGCGAGGGGATGAACTGGATCATGTGAGGAAAGCTAGGCAGAAACAGTTTTGGTGGGAGAGCCCTGTCGATGAGCTTGGATTGCATGAGCTTCTCCAGTTAAAGGCCTCCACTGAGGAACTCAAGAACAACATAGAAAAACATGCCAGCAAATTCATCATTGACCGCTCTACTGCTATATCTTCTTCGTCGATTCTTGGACCTAGTAATGGATTTGCTGCATTCGAACGCTATGACGCCTTTGATAACAAACCTGATGTTGGGATTCCCATGGCTTCATCACCTCCCGATGCTCATTATCTTGCTTTTCGAAATTGGTATCTTTGA 681 0.4596 MSKNKKCSLGRQKIPIEKIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTMRNPPQDSSAQHLVEAHRNANVRDLNMQLTQVFNLLEIEKKRGDELDHVRKARQKQFWWESPVDELGLHELLQLKASTEELKNNIEKHASKFIIDRSTAISSSSILGPSNGFAAFERYDAFDNKPDVGIPMASSPPDAHYLAFRNWYL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00444 226 Gene3D - 91 177 - -
Vian3g00444 226 PANTHER MADS BOX PROTEIN 11 166 - -
Vian3g00444 226 Coils Coil 149 169 - -
Vian3g00444 226 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Vian3g00444 226 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Vian3g00444 226 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Vian3g00444 226 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vian3g00444 226 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vian3g00444 226 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vian3g00444 226 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Vian3g00444 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Vian3g00444 226 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Vian3g00444 226 SUPERFAMILY SRF-like 10 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00444 Vian-Chr3 4187235 4187915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00444 6 207 Type I MADS-box Gene Family AT5G60440 49.756 7.88e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian3g00444 SRF-TF 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00444 - - gmx:100793705 375.555