Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00430 ATGTCTCACTCGCCGGACTCTCCCTCCGCCGCTGCTAACTTCCTCTGCCGCGAACACGCCAGCGACTTTACCTCCGACCACCATCCCCCGCCGACCCCTCCCTTTCCGGATTCCGATGACTCGCCCATCGCCGGCCTCCTCGACGCCGAGGTCCACCACATACCGGAGAAAGACTACCTCCGCCGCTGCCGCGACCGCTCCATCGACCTCACCGCGCGCCTCGACGCCGTCAACTGGATCTTAAAGGTTCACGCATTCTACAAGTTTTCTCCGGTGACGGCGTTTCTCTCCGTCAACTATTTGGACCGTTTCCTCTCTCTGTGTTCTCTTCCCCAATCGAGTGGGTGGCCGTTTCAGCTGCTATCAGTGGCATGCCTGTCTCTGGCAGCAAAAATGGAAGAGTCTCATGTCCCGTTCTTACTGGACCTGCAACTGTTCGAACCCAAATTCGTGTTTGCTCCCAAAACGATTCAAAGAATGGAGCTTTGGGTCATGTCCAATCTCAAATGGAGACTTCGCTCCGTCACGCCCTACGATTATCTTAACCATTTCATCACCAAGCTCCCTTCCTCCTCTTCCTCCGAATCCACAACGCACTGTTTCTCCACCGCCTCCAATCTCATCCTCAGCACCACCCGTGTGATTAACTTCTTGGAATTCGCGCCCTCCACAGTGGCAGCCGCCGCCGTGCTCTGCTCGGTTGGCCGTGACATTGCTTCCACCAATGGCCCATTGCCGCCGAGTTTTCACAATAGAGTAAAAGAGGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACGTGGTCGACACGTGTTACGCATCCAGCTCCACCATCAAAGAGAGAGTAGCCGAGCCGCCGCCATCCAGTCCCGTCGGCGTGCTCGACGCCGCCACCTGTGCCAGCTGCGACACACCTTCGGAGAGAATTTTCTTAAGCTTGACAGAGGAACAACGGCGAGAAGCCGAGCCACCAAATAAACGGCTCCGATTCTCTGCTCCAGATACACCGCAGCATTAG 1023 0.5611 MSHSPDSPSAAANFLCREHASDFTSDHHPPPTPPFPDSDDSPIAGLLDAEVHHIPEKDYLRRCRDRSIDLTARLDAVNWILKVHAFYKFSPVTAFLSVNYLDRFLSLCSLPQSSGWPFQLLSVACLSLAAKMEESHVPFLLDLQLFEPKFVFAPKTIQRMELWVMSNLKWRLRSVTPYDYLNHFITKLPSSSSSESTTHCFSTASNLILSTTRVINFLEFAPSTVAAAAVLCSVGRDIASTNGPLPPSFHNRVKEEMVRCCHQLMEEYVVDTCYASSSTIKERVAEPPPSSPVGVLDAATCASCDTPSERIFLSLTEEQRREAEPPNKRLRFSAPDTPQH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00430 340 MobiDBLite consensus disorder prediction 315 329 - -
Vian3g00430 340 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
Vian3g00430 340 Gene3D - 56 173 - -
Vian3g00430 340 SUPERFAMILY Cyclin-like 37 172 IPR036915 -
Vian3g00430 340 FunFam D6-type cyclin 170 263 - -
Vian3g00430 340 Pfam Cyclin, C-terminal domain 175 276 IPR004367 -
Vian3g00430 340 Gene3D - 46 261 - -
Vian3g00430 340 MobiDBLite consensus disorder prediction 315 340 - -
Vian3g00430 340 SMART Cyclin_C_2 175 304 IPR004367 -
Vian3g00430 340 SUPERFAMILY Cyclin-like 177 272 IPR036915 -
Vian3g00430 340 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Vian3g00430 340 PANTHER CYCLINS 47 275 IPR039361 -
Vian3g00430 340 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Vian3g00430 340 SMART cyclin_7 78 166 IPR013763 -
Vian3g00430 340 FunFam D2/4-type cyclin 56 169 - -
Vian3g00430 340 Pfam Cyclin, N-terminal domain 47 172 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00430 Vian-Chr3 4040211 4041796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00430 3 272 Core Cell Cycle Gene Families AT1G70210 42.599 3.55e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00430 K18810 - gmx:100776178 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00430 3 4040211 4041796 Vian3g00430 3 4040211 4041796 ECH