Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00418 ATGGATCCTACTGAGCAAATTTCTGAAGAATGGAGTTCTCTCAGTGGTTTTTGCACTGCTGAGGAAGCCGACTTCATGAGCCAGTTGCTTGACAACTGCTCACTCCCTGAAAATCTGTGTGGAAATTTCCACTTGGGAATTCCGTCTGCGACATGGCCTGGCCATGAATCAACAATACTGACCGTGACAAGCATCAATGACAGTCCATATTTTCCTACAACCGCTGATAATAGTAATAGTAATTATTTATGTTTTTCACAAGGAAGTTGCTCCACTTCTGATAGTAGCAATATATTTCGTGCTACAAGTGGCAATAAACACTGCTTGAATGACCCAGTAGCCAACATTGGCTACGTGTCCATGGGTTTTGCCAAGTTCAGCCCATATAATGTACAAGGGAGTGACAGCCAACAGATGAATGAAAACACTGATCAAGATTTATGTCCAGAGGTTATTGCTGACAAGAACTCGCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCAGCAACAGAGGATATAACCACCAATCTGGAGAAGTCGGGAAAAAGATCTAGGGGCTCAATGCAGGTACGAAAGAGCAAGAAAAATGCTAAATCCGTGAAGAAACCAAAATCTGATTCAATAAGTAACTCTGAAGAGGGTAGAAGTCCTGATCTTCAGGGTTGCTGCTCAGATGATGATGACTCCAATGCTTCTCAAGAGCTAAATGGAGGAGGATCTCCAAATCTGAGCCTGGAGGATTCTACATCCCTTAAGTTGAAGGGGAAAAAATCAACAGCTAGTAGAGGTTCTGCTACTGATCCACAAAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGATTGAAAATCCTACAAAACCTTGTCCCGAACGGAACAAAGGTGGATATCAGCACCATGCTTGAGGAAGCCGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTTTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTATCCCAACCAAACAGCCATAA 1059 0.4193 MDPTEQISEEWSSLSGFCTAEEADFMSQLLDNCSLPENLCGNFHLGIPSATWPGHESTILTVTSINDSPYFPTTADNSNSNYLCFSQGSCSTSDSSNIFRATSGNKHCLNDPVANIGYVSMGFAKFSPYNVQGSDSQQMNENTDQDLCPEVIADKNSQDHQECEVLVSEAATEDITTNLEKSGKRSRGSMQVRKSKKNAKSVKKPKSDSISNSEEGRSPDLQGCCSDDDDSNASQELNGGGSPNLSLEDSTSLKLKGKKSTASRGSATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNIIPTKQP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00418 352 CDD bHLH_AtIND_like 267 329 - -
Vian3g00418 352 FunFam Basic helix-loop-helix transcription factor 267 324 - -
Vian3g00418 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Vian3g00418 352 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 111 324 IPR045843 GO:0003700|GO:0006355
Vian3g00418 352 SMART finulus 272 321 IPR011598 GO:0046983
Vian3g00418 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 331 IPR036638 GO:0046983
Vian3g00418 352 Pfam Helix-loop-helix DNA-binding domain 276 316 IPR011598 GO:0046983
Vian3g00418 352 MobiDBLite consensus disorder prediction 176 278 - -
Vian3g00418 352 MobiDBLite consensus disorder prediction 214 270 - -
Vian3g00418 352 Gene3D - 266 323 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00418 Vian-Chr3 3930156 3931673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00418 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.482 4.94e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g00418 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00418 - - gmx:100817334 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00418 3 3930156 3931673 Vian3g00418 3 3930156 3931673 ECH