Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00416 ATGGCTTCTGCGGTGGCCGCCGCGGCGGGGCAAGAGTTGTCGAATCCTCCATCGGACGGAATAACGAATCTCCGATTCTCAAATCACAGCGATAATCTTTTGGTCTCCTCATGGGACAAGAGTGTGAGATTGTACGAAGCGAGCGCCGATGTGTTGAGAGGAGAGTTCATGCACGCTGGCCCCGTTCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGTCGCCGCCGACAACACTGTTAGACGGCTTTTCTTCAGCTCTAATAAAGAGGATATCCTAGGAAGGCATGATGCGCCTGTTCGTTGTGTTGAGTACTCCTATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGCTGGGACCCTAGAGGTACAAGTGGCCAAGAGCGCACACTCGTTGGGACATATCCACAGCCTGAGCGTGTTTACTCTCTCTCTCTGGTTGGAAATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGGAACATGTCTCAACCTGAACAGAAAAGAGAATCTTCATTGAAATATCAAATTAGATGTGTGCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCAGTGGAAGGGCGTGTCTCGATGGAATTCTTTGACCTCTCAGAAGCTATCCAGGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCCGAGGCCGGAAGGGACATTGTCTATCCCGTAAATGCAATTGCATACCACCCCATATATGGAACGTTTGCCACAGGTGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACACGAAATATCCTACCAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACATTCGAAGAAGGACCTAAAAGCAACGAATCAGATGCTATTTTTGTCCGTAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCCAATCCTCCAGCGTAA 1026 0.4795 MASAVAAAAGQELSNPPSDGITNLRFSNHSDNLLVSSWDKSVRLYEASADVLRGEFMHAGPVLDCCFHDDSSGFSVAADNTVRRLFFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGTSGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQIRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAIQAKKYAFKCHRKSEAGRDIVYPVNAIAYHPIYGTFATGGCDGYVNVWDGNNKKRLYQYTKYPTSIAALSFSRDGRLLAVASSYTFEEGPKSNESDAIFVRSVNEIEVKPKPKVYPNPPA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00416 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Vian3g00416 341 Pfam WD domain, G-beta repeat 19 45 IPR001680 GO:0005515
Vian3g00416 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Vian3g00416 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Vian3g00416 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vian3g00416 341 PANTHER MRNA EXPORT FACTOR AND BUB3 10 327 - -
Vian3g00416 341 Gene3D - 7 335 IPR015943 GO:0005515
Vian3g00416 341 SUPERFAMILY WD40 repeat-like 16 304 IPR036322 GO:0005515
Vian3g00416 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vian3g00416 341 FunFam Mitotic checkpoint protein bub3, putative 6 334 - -
Vian3g00416 341 SMART WD40_4 6 46 IPR001680 GO:0005515
Vian3g00416 341 SMART WD40_4 228 270 IPR001680 GO:0005515
Vian3g00416 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Vian3g00416 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Vian3g00416 341 SMART WD40_4 49 86 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00416 Vian-Chr3 3903852 3906880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00416 74 279 Eukaryotic Initiation Factors Gene Family AT2G46280 27.230 6.65e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00416 K02180 - gmx:100808389 633.254