Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00414 ATGGCTTTGGAGGCTTTGAATTCTCCAACAGCGCCCGCCGCTCCCTTCCGTGCCTATCAAGAAGAGGAGGAGCTTGACCATCAGTTCCGCGAGCCTTGGTCTAAAAGGAAGCGATCGAAACGACCGCGTTTTGAGACCGAGGAAGAGTATCTCGCTCTTTGCCTCATCATGCTCGCGCAGGGCGGCAACAACACCAACACTTCCTCCCACCGCCAAACTCAACACTCAGAGTCTCAGAAAGAACCGTCACCGCCGCTCAAGTTATCCCACAGGTGCACCGTTTGCAACAAGGCCTTTCCTTCTTATCAAGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTCCTCGTCGGAATCTACCTCTGTCTCCGCCGTCGCCAGCGACAGCGTCACCGCTTCCACCGCCGGCGGCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCCACCGGACAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGTGGAAACCACCACAGTAACAGCAACGCCCTCACTTCCTCCTCCGACGGCGTTGGCGGCGGTGCTGCCTCCTCCCACACGCTCCGTGGGATCGACCTGAACCTTCCGGCGCCGCTCACGGAATTCTGGCCGCCGGTGGGGTTCGACTTCAGGAAGAAAGTCGGCGGAGGCGACGAGCAAGAGGTGGAAAGCCCGTTGCCAATAACCGCAGCCAAGAAGGCGCGTTTGTTTTCGGGGGACGACCACGACGGTGATGATCAAAAGGCGTAG 765 0.5974 MALEALNSPTAPAAPFRAYQEEEELDHQFREPWSKRKRSKRPRFETEEEYLALCLIMLAQGGNNTNTSSHRQTQHSESQKEPSPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTSVSAVASDSVTASTAGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNHHSNSNALTSSSDGVGGGAASSHTLRGIDLNLPAPLTEFWPPVGFDFRKKVGGGDEQEVESPLPITAAKKARLFSGDDHDGDDQKA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00414 254 MobiDBLite consensus disorder prediction 19 44 - -
Vian3g00414 254 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Vian3g00414 254 SUPERFAMILY beta-beta-alpha zinc fingers 90 163 IPR036236 -
Vian3g00414 254 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 202 IPR044653 GO:0003700
Vian3g00414 254 MobiDBLite consensus disorder prediction 62 83 - -
Vian3g00414 254 MobiDBLite consensus disorder prediction 1 44 - -
Vian3g00414 254 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Vian3g00414 254 MobiDBLite consensus disorder prediction 116 134 - -
Vian3g00414 254 SMART c2h2final6 141 163 IPR013087 -
Vian3g00414 254 SMART c2h2final6 90 112 IPR013087 -
Vian3g00414 254 MobiDBLite consensus disorder prediction 106 138 - -
Vian3g00414 254 Pfam C2H2-type zinc finger 90 114 - -
Vian3g00414 254 Pfam C2H2-type zinc finger 141 165 - -
Vian3g00414 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 163 IPR013087 -
Vian3g00414 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Vian3g00414 254 Gene3D Classic Zinc Finger 87 163 - -
Vian3g00414 254 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00414 Vian-Chr3 3890085 3890849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00414 1 241 C2H2 Transcription Factor Family AT1G27730 44.488 4.39e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g00414 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00414 - - vum:124819975 461.07