Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00412 ATGAGCTGCAATGGTTGTCGTGTTCTCAGAAAGGGTTGCAGTGAGAACTGCATGCTACGACATTGCCTACAATTGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTTGTGGCCAAGTTCTTTGGCCGTGCTGCTCTCATGTCGTTCCTTTCCGCCGTACCTGCCAACCAAAGATCCGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGTTGTTGTGGAGTGGGAACTGGCAGCTGTGCCAAATGGGTGTGGAGAAAGTGCTCCGAGGTGGTGCTGTGTTGACCCCACTCCCTCACTTCCTCAGTAGTGTAGATGTGCACCATCAACACCATGTAACTGAGAGAGTGATGATTGCAGGTGGAACATTGTGTCACCAGGCAAAGAAGCAACGTGTGGGGACACCCTCCCAGGAATCTGAGACCTCCTATATGGGACGTAAACCACAGGATTCTGCCCCTCAAAGTCAAAGGAACCTCCTTACACTATTCTTCTGA 537 0.5084 MSCNGCRVLRKGCSENCMLRHCLQLIENPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWSGNWQLCQMGVEKVLRGGAVLTPLPHFLSSVDVHHQHHVTERVMIAGGTLCHQAKKQRVGTPSQESETSYMGRKPQDSAPQSQRNLLTLFF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00412 178 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vian3g00412 178 MobiDBLite consensus disorder prediction 141 168 - -
Vian3g00412 178 MobiDBLite consensus disorder prediction 143 168 - -
Vian3g00412 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 143 - -
Vian3g00412 178 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00412 Vian-Chr3 3869785 3870978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00412 1 116 AS2 family AT3G49940 75.000 3.54e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian3g00412 LOB 4.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00412 - - vun:114190658 335.109