Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00410 ATGGCATCTGCGGTTCCCGCCGCGACGGGGCGAGAGTTGTCGAATCCTCCATCGGACGGCATAACGAATCTCCGATTCTCAAATCACAGCGACCATCTCTTGGTCTCCTCATGGGACAAGAGTGTGCGGCTGTATGATGCGAGCGCCAATGTGTTGAGAGGAGAGTTCATGCACGCTGGCCCTGTTCTCGATTGCTGCTTCCACGACGATTCCTCTGGTTTCAGTGCCGCAGCCGACAACACTGTTAGACGGCTTGTCTTCAGCTCCAATAAAGAGGATATTCTGGGGAGGCATGATGCACCTGTTCGTTGTGTTGAGTACTCGTATGCTGCAGGCCAACTGATCACTGGTAGTTGGGACAAAACGCTGAAATGCTGGGACCCTAGAGGCGCCAGTGGACAGGAGCGCACACTAGTTGGGACATATCCACAACCTGAGCGTGTGTACTCTCTCTCACTGGTTGGACATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTCAATATCTATGATTTGAGGAACATGTCTCAACCTGAGCAAAAAAGAGAATCTTCATTGAAATATCAAACCAGATGTGTTCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCTGTTGAGGGCCGGGTTGCAATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCGAAAAAATATGCTTTCAAGTGTCACAGAAAATCGGAAGCTGGAAGGGACATAGTCTATCCTGTAAATGCAATTGCATTCCACCCCATATATGGCACATTTGCCACGGGAGGTTGTGATGGGTATGTTAACGTATGGGACGGAAACAATAAAAAGAGGCTATACCAGTACTCTAAATATCCAACTAGCGTTGCCGCACTCTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACTTTCGAAGAAGGACCTAAAAGCAACGAATCGGATGCTATTTTCGTTCGTAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCAAATCCTCCAGCGTGA 1026 0.4864 MASAVPAATGRELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGPKSNESDAIFVRSVNEIEVKPKPKVYPNPPA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00410 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Vian3g00410 341 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Vian3g00410 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Vian3g00410 341 Gene3D - 7 335 IPR015943 GO:0005515
Vian3g00410 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Vian3g00410 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vian3g00410 341 MobiDBLite consensus disorder prediction 1 20 - -
Vian3g00410 341 PANTHER MRNA EXPORT FACTOR AND BUB3 11 327 - -
Vian3g00410 341 SMART WD40_4 49 86 IPR001680 GO:0005515
Vian3g00410 341 SMART WD40_4 6 46 IPR001680 GO:0005515
Vian3g00410 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Vian3g00410 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Vian3g00410 341 SMART WD40_4 222 270 IPR001680 GO:0005515
Vian3g00410 341 SUPERFAMILY WD40 repeat-like 17 304 IPR036322 GO:0005515
Vian3g00410 341 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Vian3g00410 341 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Vian3g00410 341 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
Vian3g00410 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vian3g00410 341 FunFam Mitotic checkpoint protein bub3, putative 6 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00410 Vian-Chr3 3851968 3855135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00410 75 303 U-box Gene Family AT2G33340 24.464 6.72e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00410 K02180 - gmx:100808389 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00410 3 3851968 3855135 Vian3g00410 3 3851968 3855135 ECH