Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00408 ATGGGACACTCCAACGTTTGGAACTCTCACCCCAAGAATTATGGTCCTGGTTCTCGTACTTGCCGTGTGTGTGGAAACCCACATGGATTGATCAGGAAGTATGGCCTTATGTGCTGCAGGCAGTGCTTCCGTAGCAATGCCAAGGAGATTGGCTTCATCAAGGGTGCGACCCACAGACAGCCAGAGAGAGTGAAAGCACATAAACGATCAAGTGACCTGCTTTATAAGTTGTACCAACTACTAAATGCAGAGTTCCAATTTCCTTCTTCTTGA 273 0.4725 MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKGATHRQPERVKAHKRSSDLLYKLYQLLNAEFQFPSS 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00408 90 Gene3D 30s Ribosomal Protein S14; Chain N 1 55 IPR043140 -
Vian3g00408 90 Hamap 30S ribosomal protein S14 type Z [rpsZ]. 2 57 IPR023676 GO:0003723|GO:0003735|GO:0006412|GO:0015935
Vian3g00408 90 Pfam Ribosomal protein S14p/S29e 7 54 IPR001209 GO:0003735|GO:0005840|GO:0006412
Vian3g00408 90 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 IPR039744 GO:0003735|GO:0008270
Vian3g00408 90 FunFam 40S ribosomal protein S29 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00408 Vian-Chr3 3838320 3840231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00408 1 54 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 92.593 2.33e-33 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00408 K02980 - aew:130754167 127.102