Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00402 ATGGGTGATGCACTAAATGAAGTGCAGCACAGGGGTGGTGTACCCGCTTCTTCTCCCAAGAGGGACATTGCATTGTTTGAAGGAGACAAGGATTTTGAGCCGCACAATGGCATTGAATTTGAATCCCATGAAGCAGCATATTTATTTTATCAGGAATATGCCAAATCTATGGGATTCACTACTTCAATAAAAAACAGCAGACGTTCGAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTTACGCCTGAGTTTGACAGTGGCAGCAGTCGAAGACCAAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCACGTGAAGAGAAAGCCAGATGGAAAATGGATCATTCACGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCTGAAAAGAATAATATTGATATCTTGAATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCAAGGCAATCTGGAGGCTGTCAAAACATCGGGTCTTTTGTGAGTGATATAAACTATCAGTTTGACAGAGGCCAGTATCTGGCTTTGGAAGAGGGAGATGCCCAAATTATGCTTGAGTATTTTAAGCATGTGCAAAAGGAGAGTCCCAACTTCTTCTATTCTATAGATTTAAGTGAAGAACAGCGGTTAAGAAATCTATTTTGGATTGATGCAAAAAGTATCAATGATTATCTTAGCTTTAATGATGTAGTTTCATTTGATACCACTTACATAAAAAGCAATGACAAGTTGCCGTTTGCACCTTTTGTTGGAGTGAATCATCACTCTCAGCCTATTTTGCTTGGATGTGCATTGGTTGCTGATGAGAGTAAACCAACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCTATGGGTGGGCAAGCTCCCAAGGTTATAATCACTGATCAAGACAAAGCCTTGAAGGCAGCAATTGAAGAAGTCTTTCCGAATGTACGTCATTGTTTTTCTCTTTGCCACATACTAGAGAGGATACCAGAAAATCTCTCTTTTGTGATCAAACAACACAACAACTTCTTACAAAAATTTAATAAGTGCATTTTTAAATCGACAGAGGACCAGTTTGACATGAGATGGTGGAAAATGGTCAGCATATATGAACTCCAAGATGATGTTTGGTTTCAGTCATTGTATGAGGACCGGAAAAAGTGGGTGCCGACTTACATGGGGGATACCTTTTTAGCTGGAATGTCTACACCTCAGCGCTCTGAAAGTACGAGCTCTTTCTTTGACAAATATATTCATAAGAAAATTACCCTCAAGGAGTTTGTAAAACAGTATGGGATAATTCTGCAGAATAGGTATGATGAAGAAGCCATTGCGGATTTTGAATCATTGCACAAGCAGCCAGCACTTAAATCTCCTTCACCTTGGGAAAAGCAAATGTCAACAATTTATACGCATGCAATATTTAAGAAATTTCAAGTTGAAGTTCTGGGTGTAGCTGGTTGTCAATCTAGGATAGATGTTGGAGATGGAACTCTTGCAAAGTTCATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACTTGGAATGAAATGAGCTCAGAGGTCTCTTGCTTTTGTCGATTGTTTGAATATAAAGGTTTCCTCTGCAGGCATGCTTTGAGTGTTCTGCAACGTTGTGGTTGTTCAAGTGTTCCATCTCATTATATCTTGAAGAGGTGGACGAAAGATGCCAAAATTAAGGAATCAGTGGCTGATAGGACAAGAAGGATACAAACTAGGGTGCAGCGTTATAATGACTTGTGTAAACGAGCCATCGATTTAAGTGAAGAAGGATCATTATCTGAAGAGAATTACAATGTTGTTTTTCGTGCACTTGTTGACGCCTTGAAGAACTGTGTATTGGTGAATAATTGTAACAACAACGGTGCAGAAACTAGCAACAATGCCTATGGCCTTCGTGAAACAGAAGAAAATCAGGGTCCTCTTGCTTTGAAACCAAATAAAAAGAGGAACGCAGCTAGGAAAAGAAAGGCACAATTAGAGCAGGATGTTATACTTGTTAATGCTCAAGATAGCCTGCAGCAAATGGATAATCTCAGCTCGGATGCAATGACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGCAGGTACAATTGAACTTAATGGAGCCGCCTCATGATGGCTACTATGTTAATCAACAGGGCATGCAAGGCCTGGGTCCTTTGAATTCCATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAGGAATTCATGGGCTGGGAGGGCAATTGGAATTTCGTCCATCAACTACTTTTGGATATAGCCTTCAGGATGAACCTGATCCCCAGTTTCATGGCAACAGTTCAAGAAATACTTAG 2427 0.3956 MGDALNEVQHRGGVPASSPKRDIALFEGDKDFEPHNGIEFESHEAAYLFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPEFDSGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILNAVSERTRKMYVEMSRQSGGCQNIGSFVSDINYQFDRGQYLALEEGDAQIMLEYFKHVQKESPNFFYSIDLSEEQRLRNLFWIDAKSINDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALVADESKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKAAIEEVFPNVRHCFSLCHILERIPENLSFVIKQHNNFLQKFNKCIFKSTEDQFDMRWWKMVSIYELQDDVWFQSLYEDRKKWVPTYMGDTFLAGMSTPQRSESTSSFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFESLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRIDVGDGTLAKFIVQDYEKDEEFLVTWNEMSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYILKRWTKDAKIKESVADRTRRIQTRVQRYNDLCKRAIDLSEEGSLSEENYNVVFRALVDALKNCVLVNNCNNNGAETSNNAYGLRETEENQGPLALKPNKKRNAARKRKAQLEQDVILVNAQDSLQQMDNLSSDAMTLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQQGMQGLGPLNSMAPSHDGFFGTQQGIHGLGGQLEFRPSTTFGYSLQDEPDPQFHGNSSRNT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00402 808 SMART 26again6 545 572 IPR006564 GO:0008270
Vian3g00402 808 Pfam MULE transposase domain 255 348 IPR018289 -
Vian3g00402 808 Coils Coil 680 700 - -
Vian3g00402 808 MobiDBLite consensus disorder prediction 1 20 - -
Vian3g00402 808 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 643 IPR031052 GO:0006355
Vian3g00402 808 MobiDBLite consensus disorder prediction 786 808 - -
Vian3g00402 808 Pfam SWIM zinc finger 544 569 IPR007527 GO:0008270
Vian3g00402 808 Pfam FAR1 DNA-binding domain 49 135 IPR004330 -
Vian3g00402 808 ProSiteProfiles Zinc finger SWIM-type profile. 534 570 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00402 Vian-Chr3 3811091 3814108 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian3g00402 MULE 4.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00402 - - gmx:100805377 1517.29