Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00400 ATGACGAGCGCTTCGGAGCTATTCCACACCAGAAGGCATCGATTGGGACGAAATTCTATCGATCTAGGGTTCGACACAGAACTCCAAGCCGCCGATTCTTTCCGCCGTCGCCACCACGTCCGCCGCCTCCGTCACCACCCGGAGCGTGCATCTGATAGAGCCGGTGGGAGGTATCGACGGTCTTTTGTAATTGATAGCGTTGATTCCGAAGAAAACGTAAGAGGCAGTCTTGGAGGGAGTAACAGTGAGAGGCTACCCGTGGGTGTGGTTCTTGCACGGGCCAGACTCATTCAGAGGTTGAGAGGGGAACCTCTGTCTAGAAACAGGCAACATGTAGATTCATTGGGTGAGGATCGGGAAAGTGAATCATCACATGAAGTTGCAACTCAGGCCACTCTAGTTACTGACTTGACTTCACAGATGGGAAGGTCCCAGTTCTTGCAGGAACTACACAAAAAGCCACCAGGGCTTACTCAGGAGGCCTTGGACTGTTTGGATCAGGAAGTTTTTAGCAGCAGCGAGGCAGGATTGGATTCCAGGGTAATGCAGGACTGTAGTATATGCTTGGAAACTTTCACGGATGGAGATGAGCTGATACGTCTGCCATGTGGACATAAATTCCATTCTGTTTGCTTGGATCCATGGATTCGCTGCTGTGGAGACTGCCCATATTGTCGAAGACGTGTAGTTCTAAATACTCACTTACCACAATACGACCATGAGTAA 726 0.5014 MTSASELFHTRRHRLGRNSIDLGFDTELQAADSFRRRHHVRRLRHHPERASDRAGGRYRRSFVIDSVDSEENVRGSLGGSNSERLPVGVVLARARLIQRLRGEPLSRNRQHVDSLGEDRESESSHEVATQATLVTDLTSQMGRSQFLQELHKKPPGLTQEALDCLDQEVFSSSEAGLDSRVMQDCSICLETFTDGDELIRLPCGHKFHSVCLDPWIRCCGDCPYCRRRVVLNTHLPQYDHE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00400 241 MobiDBLite consensus disorder prediction 107 128 - -
Vian3g00400 241 CDD RING-H2_PA-TM-RING 184 226 - -
Vian3g00400 241 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vian3g00400 241 SUPERFAMILY RING/U-box 184 235 - -
Vian3g00400 241 SMART ring_2 185 225 IPR001841 -
Vian3g00400 241 Pfam Ring finger domain 184 226 IPR001841 -
Vian3g00400 241 PANTHER SI:CH211-59O9.10 33 230 - -
Vian3g00400 241 MobiDBLite consensus disorder prediction 107 125 - -
Vian3g00400 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 230 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00400 Vian-Chr3 3788790 3790688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00400 1 230 C3H Transcription Factor Family AT1G49850 40.078 3.17e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00400 - - gmx:100814695 379.022