Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00390 ATGAACAGTGCTAGCTACCTGCTGAGTTTCACCTCAGGGACCTTTTATTCCAACCGAGTCACATCAGCCATGACTTCTTCTTGCCCAGGAATTGATCCTCTTCCCTCCGAGTTCCGCTTCTTCAAGATTATTGTGGATACTACTCTCCAAAAGGGAAAAATTATGATTCCAAAGGAGTTCACTCGGAAATATGGTGGTAGATTGTTAAACCCTTTGTTTCTCAAGGTTCCCGATGGCATTGAATGGGAACTATGTTGGACTAAAGACGGTACTGGTAATGTTTGGTTGGAAAAGGGATGGAAGGAATTTGCCACTTATTACTCCCTTGGCTACGGTCATCTTGTGACGTTCAAATACCAACAAACATGTACATTAGAGGTACACATATACAATACATGTGCCGTAGAAATAAATTATCCCTCCAACAACACTCAAAACAGTTCTAGTAATGTTTTGTTTGAGGTAGCTCCAACATCACCATCTCTTCCTGGGCTTTCTAAGAAACCAAGGAAACACCCAATTGGGCCAGGCTCCAGTTTACCTCAGCACGTCCAAGTTAAAGTTGATCTGCTTCAAGAGAATAGTGGTGCAACCAGATCTGAAACTCCTTCTTTTATGGTTACCCTGAAGGATACAAACGTGAATGGATATATTTTGGTCATTCCGTCCATCTTTACTAAAAAGTATTTGAAGGAAACCGGCAAACAAGATATCCTCCTTCAAGTCTTGGATGGGAGAACTTGGCACGTTACATTAAAGAATGGCAAATTTTTCAAGGGATGGAGGGCTTTTGTATCACATAACTATTTGAATGTTGGGGATGTTTGCATTTTTGAGCTAACCGAGAGCCAAGCTCCATGTTTTAAAGTGTCAATAATTCCAATTTCACAAGATAAATGTTCGAGTTCACAAGATAGAGAATATGTTGACCTTACGAAAATCCAAGACTTTAGATGTATTGATACTTTTTCCATCAAAGCTATGCAAGAAGCAGCAAAGTTCACGTCCGTAAATCCTTTTTTCACGCTCAAAATAAGGGCAAATCATAGGGGAGATTTCAGATCGCGTGTACCACTTGATTTTGTGAGAGAGTACTTCCACAAGAAACAGGTGACGTTACAGTTTGGGAATAAATCATGGCGGGTAAAACTGGTTGGTGCTGTTCCAACAAAGCTGTCTCAAGGTTGGAGCCCATTTGCAAAAGAATGTAAGTTGCAACCTGGAAATGTTTGCGTCTTTGAGTTAACAAACGAAGAAGATTTAGTACTTGATGTTCATATTTTTAGGGGACAATCTTAG 1299 0.4018 MNSASYLLSFTSGTFYSNRVTSAMTSSCPGIDPLPSEFRFFKIIVDTTLQKGKIMIPKEFTRKYGGRLLNPLFLKVPDGIEWELCWTKDGTGNVWLEKGWKEFATYYSLGYGHLVTFKYQQTCTLEVHIYNTCAVEINYPSNNTQNSSSNVLFEVAPTSPSLPGLSKKPRKHPIGPGSSLPQHVQVKVDLLQENSGATRSETPSFMVTLKDTNVNGYILVIPSIFTKKYLKETGKQDILLQVLDGRTWHVTLKNGKFFKGWRAFVSHNYLNVGDVCIFELTESQAPCFKVSIIPISQDKCSSSQDREYVDLTKIQDFRCIDTFSIKAMQEAAKFTSVNPFFTLKIRANHRGDFRSRVPLDFVREYFHKKQVTLQFGNKSWRVKLVGAVPTKLSQGWSPFAKECKLQPGNVCVFELTNEEDLVLDVHIFRGQS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00390 432 ProSiteProfiles B3 DNA-binding domain profile. 39 133 IPR003340 GO:0003677
Vian3g00390 432 PANTHER B3 DOMAIN-CONTAINING 199 425 - -
Vian3g00390 432 SUPERFAMILY DNA-binding pseudobarrel domain 38 131 IPR015300 -
Vian3g00390 432 ProSiteProfiles B3 DNA-binding domain profile. 340 431 IPR003340 GO:0003677
Vian3g00390 432 CDD B3_DNA 38 131 IPR003340 GO:0003677
Vian3g00390 432 CDD B3_DNA 203 294 IPR003340 GO:0003677
Vian3g00390 432 SMART B3_2 340 431 IPR003340 GO:0003677
Vian3g00390 432 SMART B3_2 205 296 IPR003340 GO:0003677
Vian3g00390 432 SMART B3_2 40 133 IPR003340 GO:0003677
Vian3g00390 432 Pfam B3 DNA binding domain 47 130 IPR003340 GO:0003677
Vian3g00390 432 Pfam B3 DNA binding domain 208 289 IPR003340 GO:0003677
Vian3g00390 432 Pfam B3 DNA binding domain 340 430 IPR003340 GO:0003677
Vian3g00390 432 SUPERFAMILY DNA-binding pseudobarrel domain 199 294 IPR015300 -
Vian3g00390 432 ProSiteProfiles B3 DNA-binding domain profile. 204 296 IPR003340 GO:0003677
Vian3g00390 432 Gene3D - 187 296 IPR015300 -
Vian3g00390 432 Gene3D - 323 431 IPR015300 -
Vian3g00390 432 Gene3D - 35 133 IPR015300 -
Vian3g00390 432 SUPERFAMILY DNA-binding pseudobarrel domain 336 429 IPR015300 -
Vian3g00390 432 CDD B3_DNA 339 429 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00390 Vian-Chr3 3708212 3710349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00390 20 152 B3 DNA Binding Superfamily AT1G49475 32.331 1.34e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian3g00390 B3 8.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00390 - - var:108325311 889.026