Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00387 ATGATGATCAAAGTAGATGAAACAATCGTATCAACAGCCAAAGAACAACCAGTTGAAGTGATGAACGGAGAAAAGGACAACTATGGAAGTGAGGATGACAACCCCAAAGAGTGGTTGAACCTGAACATAGGAGGCACTTCACTCTCAACTGTTGGAGGCCCTGATGTACAATCAAGACCAACCACTGCAAAAGTTTTTTCATGCAACTTCTGCATGAGGAAGTTCTTCAGTTCACAGGCATTAGGAGGTCATCAAAACGCCCACAAGAGGGAAAGGGGAGCTGCCAGAAGGTACCAATCTCAGAGGTCGATGACAGTAATGGGCTTCTCCATGAACACGCCAATTATGCTTCGATCACTCGGTGTCCAGCCCCATTCACTCGTGCACAAGCCATGCAGAGGTGGTACTGTGGTGGCACCAAGCTTTCATGATGCACATGCAAGGCTTGCGATGGCTTGGACGCCGTTCTCGTCAGAGGATCAAACAGATCTGGTGTGGCCAGGTAGCTTTCGCTTGGTTCCACAACAGCCCCAGCCACCACATGAGCCACTTAAGCTTGATTTAGACCTCAGACTCTGA 579 0.487 MMIKVDETIVSTAKEQPVEVMNGEKDNYGSEDDNPKEWLNLNIGGTSLSTVGGPDVQSRPTTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQRSMTVMGFSMNTPIMLRSLGVQPHSLVHKPCRGGTVVAPSFHDAHARLAMAWTPFSSEDQTDLVWPGSFRLVPQQPQPPHEPLKLDLDLRL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00387 192 PANTHER ZINC FINGER PROTEIN 4-LIKE 6 192 - -
Vian3g00387 192 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vian3g00387 192 Gene3D Classic Zinc Finger 52 112 - -
Vian3g00387 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Vian3g00387 192 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00387 Vian-Chr3 3685711 3686289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00387 64 180 C2H2 Transcription Factor Family AT1G24625 43.089 2.39e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00387 - - gmx:100306296 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00387 3 3685711 3686289 Vian3g00387 3 3685711 3686289 ECH