Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00377 ATGAGCCTTAATCCTCAGAATCTCCATTTCTTGTGGAGGCTCTCATCGTTTCTTCTTCTACTTCTTCAATCTGCTACATCTCAGTCAGTTACATCTCTTAACTCTGATGGGATTCTCCTGCTAAAATTCAAATACTCCATCCTCAGCGACCCTTTGTCAGTCCTAGAAAGTTGGAACTACGATGATGCAACGCCATGTTCATGGTATGGTGTTACGTGCAACGAAATTGGAGTCCCCGGTACCCCTGATTTGTTCAGAGTAACCAGTTTGACACTTCCCAATAGCCAACTTTTGGGTTCCATTTCTGAGAACTTGGGCTTGATCCAATACCTTCGCCACATCGATCTCTCCAACAATTTCCTTAATGGCTCTCTACCCAACACTATCTTCAACTCTTCCCAGCTGCAAGTACTTTCTCTCTCAAACAATGTTATCTCGGGTCAACTAAATCAGCTGGTTGGAAAACTAACAAACCTTAAAGTTCTCAATCTCTCTGACAATGCCTTTGCCGGGTTGATCCCAGAAAACCTCACTACTCTACCAAACTTAACCGTTGTTTCTCTGAAGAGTAACTACTTCTCTGGTAGTGTCCCAACCGGGTTCAAGTACGTGGAGATTCTGGATCTGTCCTCCAACTTGTTAAACGGTTCTTTGCCAGAAGACTTTGGCGGCGAAAGCTTACGCTACATGAACCTCTCTTACAACAAGATTTCGGGAACAATTCCTCCGACATTCGCCGAACAGATTCCTGGAAACTCAACGGTGGACCTCTCATTCAACAATCTGACAGGGCCGGTACCAGACTCTTCGACTTTGCTCAACCAGAAGACAGAGTTTCTATCAGGAAATGCTGATCTTTGTGGTAAGCCTCTGAAGATTATGTGCACCGTTCCCTCTACTGAGTCCACAGCTCCGCCCAACGTCACCACCTCTTCACCAGCCATTGCTGCCATACCGAAAATTGACTCAAACCCTTCAACAAACACAACAGGAACCCCCACCAGTTCTCAGAATGTATCACCAAGTGGCCTAAAACCTGCCACCATAGCAGCAATTGTGGTGGGAGACTTGCTTGGCATGGCCCTTTTGGCCCTAGTCATTCTCTTCGTCTACCAACAGAGAAAGAAAAGATATTCGGATCCAAATCCAAATTCAAAACGAGACACTAATGCTGCTTCTGGTAACAACTCAGAAAAGAAATACGAAACTGTTTCACGACAAGATGCAGATGCAAAAACAGTAACTCCTTCACTTCCTTGTTCCTGCTTAACAATCAAAGAAGAAGAAACCTCAGAGGCAACTAGCTCCGACAGTGACCGCGAGAGCAACACCGCAGTGGACATCATGGCAGCACAAAACGGGAACCTTCCGAAACAAGGCACTCTTGTAACCGTTGACGGGGAAACAGATTTGGAGCTTGAGACTCTGCTTAAGGCTTCAGCGTATATTCTGGGAAACAGCCGCGTCAGCATTGTCTACAAGGCAGTGCTAGAGGATGGGAGAGCCTTTGCCGTTAGAAGGATCGGTGAGTGTGGGATTGAGAGAAGGAAGGACTTTGAGAACCAAGTACGTGCCATTGCAAAGCTTCGCCATCCCAATTTGGTTAAGGTTCGCGGCTTCTGCTGGGGTCGAGATGATAAACTCCTGATATGTGACTACGTCCCCAATGGCAGCCTCGCCACCATTGATCACAGAAAATCAGGTTCGTCCCCTCTGAACTTGTCCCTGGAGATACGGTTGAAGATAGCAAAAGGGGTGGCACGAGGGTTGGTCTTCCTTCACGAGAAGAAGCACGTGCATGGCAATGTTAGACCTGGCAACATCCTGCTAAACTCGGAAATGGAAGCCATCATAAGCGATTTTGGGCTGGACCGGCTCCTCCTGAACGATGTGACCCACAGAGCAAACGGTTCGGCTAGACAACTAATGGCGAGCCAAAGAAGCCAGCAAGACCTGCCATGTGGTTCAAGTCCCTTCGCAGCAATGGGATCATCGTCGAGTGGTGCGGGCCACATAATGCCCTATCAAGCCCCAGAGTCACTTGAGAACATCAAACCCAGTCACAAATGGGACGTGTACTCTTTTGGAATGGTGTTGCTGGAGCTTCTAACCGGGAGGGTTTTCCTGGAGCGGGAGTTGGAGCAGTGGAACGAACCGGGTTTGGTGGAGGAGGAGCAGAACCGGGTTTTGAGAATGGCTGACGTAGCAATAAAATCTGAAATAGAAGGGAGGGAGAATGTGGTAGTGGCATGGTTCAAGTTGGGGCTTAGCTGTGTCTCTCATGCCCCGCAAAAGAGACCCTCCATGAAAGAGACTCTACAAATCTTAGACAAGATCCATGCTGCTGCTCCACTCAATTAA 2361 0.4782 MSLNPQNLHFLWRLSSFLLLLLQSATSQSVTSLNSDGILLLKFKYSILSDPLSVLESWNYDDATPCSWYGVTCNEIGVPGTPDLFRVTSLTLPNSQLLGSISENLGLIQYLRHIDLSNNFLNGSLPNTIFNSSQLQVLSLSNNVISGQLNQLVGKLTNLKVLNLSDNAFAGLIPENLTTLPNLTVVSLKSNYFSGSVPTGFKYVEILDLSSNLLNGSLPEDFGGESLRYMNLSYNKISGTIPPTFAEQIPGNSTVDLSFNNLTGPVPDSSTLLNQKTEFLSGNADLCGKPLKIMCTVPSTESTAPPNVTTSSPAIAAIPKIDSNPSTNTTGTPTSSQNVSPSGLKPATIAAIVVGDLLGMALLALVILFVYQQRKKRYSDPNPNSKRDTNAASGNNSEKKYETVSRQDADAKTVTPSLPCSCLTIKEEETSEATSSDSDRESNTAVDIMAAQNGNLPKQGTLVTVDGETDLELETLLKASAYILGNSRVSIVYKAVLEDGRAFAVRRIGECGIERRKDFENQVRAIAKLRHPNLVKVRGFCWGRDDKLLICDYVPNGSLATIDHRKSGSSPLNLSLEIRLKIAKGVARGLVFLHEKKHVHGNVRPGNILLNSEMEAIISDFGLDRLLLNDVTHRANGSARQLMASQRSQQDLPCGSSPFAAMGSSSSGAGHIMPYQAPESLENIKPSHKWDVYSFGMVLLELLTGRVFLERELEQWNEPGLVEEEQNRVLRMADVAIKSEIEGRENVVVAWFKLGLSCVSHAPQKRPSMKETLQILDKIHAAAPLN 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00377 786 ProSiteProfiles Protein kinase domain profile. 478 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00377 786 FunFam Leucine-rich repeat receptor-like protein kinase 203 297 - -
Vian3g00377 786 MobiDBLite consensus disorder prediction 377 414 - -
Vian3g00377 786 FunFam Leucine-rich repeat receptor-like protein kinase 33 199 - -
Vian3g00377 786 Pfam Leucine Rich Repeat 111 129 IPR001611 GO:0005515
Vian3g00377 786 SUPERFAMILY L domain-like 38 293 - -
Vian3g00377 786 Gene3D Transferase(Phosphotransferase) domain 1 554 784 - -
Vian3g00377 786 MobiDBLite consensus disorder prediction 384 400 - -
Vian3g00377 786 Gene3D Phosphorylase Kinase; domain 1 455 553 - -
Vian3g00377 786 MobiDBLite consensus disorder prediction 300 343 - -
Vian3g00377 786 Pfam Protein kinase domain 483 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00377 786 Gene3D Ribonuclease Inhibitor 33 202 IPR032675 -
Vian3g00377 786 Gene3D Ribonuclease Inhibitor 203 297 IPR032675 -
Vian3g00377 786 SUPERFAMILY Protein kinase-like (PK-like) 483 776 IPR011009 -
Vian3g00377 786 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vian3g00377 786 CDD TM_EGFR-like 348 377 - -
Vian3g00377 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 87 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00377 Vian-Chr3 3595919 3598533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00377 14 780 Receptor kinase-like Gene Family AT4G37250 49.678 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian3g00377 Pkinase 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00377 - - gmx:100820334 1241.48