Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00354 ATGGATTCAGTGCCTGTTAATGTGTCTAATTCACATCCTATCAAAGATCCACCCACTTCTTCTCCTGCTAAAGAGCGTGATGGGCAAGCTTCTGCTGCTTCAGTTTCTGAGCAAGATAATTCAGCACATGAGACACCTTCTATGCCATCCCCACCAGGCATATCGTCTTGGGCCAAAAGCTTGAAAATTTCTCAGTCATTTTCTCGCTCCCAAGATGACACATCAGGTGGAAATGTTGAGAAATCAACTTTTGCACGTTTCACTAGTAATCTGGGATTGAGGCTGTCTCCAAAGTCTCCTGTATCAGATGACATTTCCAATGAAACTGCTGCACAATCTAATTTGTTTGGAAGCATTACGAAAGGCCTGGTTGACACTTCTAAGAATGCCGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTCGTTTCCCAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAGAACATCATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGGTTTTTCGGATATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAGGTTTATAATCTTTGTTCTGAGCGGTTGTACGATGCATCATTGTTTGAGGGGAAGGTGGCGAGCTTCCCTTTTGATGACCACAATTGCCCGCCAATTCAACTAATTATATCCTTCTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTTGTGGTTGTCCACTGCAAGGCTGGAATGGCTAGGACAGGGTTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACGGCTGAGGAGTCGATGGATTACTATAATCAAAAAAGATGTGTTGATGGAAAGGGACTTGTTCTACCGAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTAACTTACTTCAATGGCGAAAACCCTCCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCTGTAACCGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCGCGAACCAAGGATCTTATGCCAGAAGATTTTTGGTTCAGTGCACCAAAGAAGGGAGTGATGGTATTTGCTTTGCCAGGAGAGCCCGGTCTTACAGAGTTGTCTGGGGACTTCAAAATTCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACCGAAAATAGAAAAGTATTGAACACTGGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTTATGGTTGAGGTTGTGCTCTTGGACCATAATGCCAATGTAGTAACTTTGCAACCTAAAACTACTTCAACGAAATCAGATGAGAGTTCAAGTAACAGTCCTACTGGTCCTGTGCCAGTGGAAAGGAGCACCCCTTCACAGAATGCAGTCAAAGAATCAGAGAGTCATAATGATAAAGATGACGTATTTTCAGATGGCGAGGCAGAACAATCTGCTTCTTCAACAACCAAGCAAAAAAACGCACCTTCTGAAGCAGTTGAAACTGTTAAAAATGACACCAGAGGCTCCGACTCCGACAGAATTTCAAATGAAATTGCAAACTTATCGCATGCAACAGAACAAGTTTCTTTGGGAAACAAGAGCTCCTCCACGTCAATTCATCACGCTAGTGAGCCAAGAAGTAATGTTGACAGTAAAACAGTGTCCAGTATCGAGGTGCCCAGTGCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATACTTCTGTTTTTACCTTTGGAGATGACGAAGACTACGAAAGTGATTGA 1875 0.424 MDSVPVNVSNSHPIKDPPTSSPAKERDGQASAASVSEQDNSAHETPSMPSPPGISSWAKSLKISQSFSRSQDDTSGGNVEKSTFARFTSNLGLRLSPKSPVSDDISNETAAQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSVTVSDHSGVLFSTKKHPRTKDLMPEDFWFSAPKKGVMVFALPGEPGLTELSGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLLDHNANVVTLQPKTTSTKSDESSSNSPTGPVPVERSTPSQNAVKESESHNDKDDVFSDGEAEQSASSTTKQKNAPSEAVETVKNDTRGSDSDRISNEIANLSHATEQVSLGNKSSSTSIHHASEPRSNVDSKTVSSIEVPSAESEFKAMAADTSVFTFGDDEDYESD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00354 624 MobiDBLite consensus disorder prediction 517 539 - -
Vian3g00354 624 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Vian3g00354 624 MobiDBLite consensus disorder prediction 468 593 - -
Vian3g00354 624 MobiDBLite consensus disorder prediction 1 17 - -
Vian3g00354 624 MobiDBLite consensus disorder prediction 24 57 - -
Vian3g00354 624 MobiDBLite consensus disorder prediction 550 593 - -
Vian3g00354 624 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 594 - -
Vian3g00354 624 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Vian3g00354 624 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Vian3g00354 624 MobiDBLite consensus disorder prediction 502 516 - -
Vian3g00354 624 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Vian3g00354 624 MobiDBLite consensus disorder prediction 468 501 - -
Vian3g00354 624 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Vian3g00354 624 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Vian3g00354 624 MobiDBLite consensus disorder prediction 1 57 - -
Vian3g00354 624 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Vian3g00354 624 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Vian3g00354 624 SMART PTEN_C2_2 331 459 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00354 Vian-Chr3 3415608 3422387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00354 33 624 Protein tyrosine phosphatase (PTP) family AT3G19420 68.562 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00354 K01110 - gmx:100784003 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00354 3 3415608 3422387 Vian3g00354 3 3415608 3422387 ECH
Vian10g00560 10 5269228 5278574 Vian3g00354 3 3415608 3422387 PCT