Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00337 ATGGGGGATCACTTTGAATTACTGGTCGATCGATTGCTTACTGAATCCACATTAGAAGCTGCAATTGAAAGCAGGAATAAGTCTATGTTGGCTGCATCCTCAGCAGTGAATGACGCGAAAATTGATCTCAATTTGATGAAAGTGGGTCTGGATGATATAAAATTTCCCGGGAAGCTGGTAGAATGCAGGATATGTCATGATGACGATGAAGATACCAATATGGAGACACCCTGCTCTTGTTGTGGTAGTTTGAAGTACGCTCACCGTAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAGGCCAGGCTATACTGCTCCTCCACCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGGAATTGGGAGATTTCAAGAAGAGACTTGAATAGTACACATTTGGTTAGCATGGTCCCCACTGATCAAAACGTTAACACTTCTAACTATGATCAGTATTCAGCCTCTGTTACAGGAAGTTTGATTTGCTGTCGTTCAATTGTTGTCATTGTAAATCTCTTGTCTCTTTTATGCATGTATGCCACTATGCCCTTACTCCTACTGATTGTGACATTTCCAATCTCTGTTTCTCTTGTGCAGTTCATGGTTATTCTGATTTTAAGACACACACTTCCCCTTGTAATTAGTGAAAATAAGGAGTATTCTTTCCCACTCTTTTTGCTGTTGTTGTTTCGGACTGTGGGAGTTGTTCTTCCAATATACTTCATGGTTAGAGCAGTGGCATTAATCCAGCGCCATCGGAGACAGCATCGAGAGCATCTTAATGCCTTGGCCATTTCATCTGACGATGAAAGCGAGCAAGCAGATTTGCAGCCTCAGCCTCAGCCTCATATCATACATGTACTGTAA 906 0.4227 MGDHFELLVDRLLTESTLEAAIESRNKSMLAASSAVNDAKIDLNLMKVGLDDIKFPGKLVECRICHDDDEDTNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFRPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNVNTSNYDQYSASVTGSLICCRSIVVIVNLLSLLCMYATMPLLLLIVTFPISVSLVQFMVILILRHTLPLVISENKEYSFPLFLLLLFRTVGVVLPIYFMVRAVALIQRHRRQHREHLNALAISSDDESEQADLQPQPQPHIIHVL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00337 301 FunFam Zinc finger family protein 51 117 - -
Vian3g00337 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 116 IPR013083 -
Vian3g00337 301 SUPERFAMILY RING/U-box 61 112 - -
Vian3g00337 301 CDD RING_CH-C4HC3_MARCH 62 108 - -
Vian3g00337 301 Pfam Protein of unknown function (DUF3675) 113 259 IPR022143 -
Vian3g00337 301 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 208 269 IPR033275 -
Vian3g00337 301 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Vian3g00337 301 SMART ringv_2 61 108 IPR011016 GO:0008270
Vian3g00337 301 MobiDBLite consensus disorder prediction 281 301 - -
Vian3g00337 301 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00337 Vian-Chr3 3241922 3243712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00337 61 112 C3H Transcription Factor Family AT2G37950 45.455 2.80e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00337 - - vun:114190540 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00337 3 3241922 3243712 Vian3g00337 3 3241922 3243712 ECH