Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00325 ATGGTGCACACTGCAGAAAGTCTAGTCGGGTTAGAGGCCGACGATCAAGATCAGGTTCATGGAAACGCCGTTCCAGGTGTAGCTTTGCAGAAACTAACTTCTTATCTTATGAATCTGTTATCGAGTCAAGATTCTCCTGACTGGAGGAATCCTGGAAATAATTTGTTTGTTAATTTCCTGCCCTGGTGGACAACTGAGAGGGATCTTCAGCAGCTTTTCAGTACACAGGGAGAGGTTGTCGACAGCCACTTGGTGAGAGATTTTCATACCAAGGAATCTCGTGGATTTGCTTTTGTCACTATGGCAACTACAGATGACGCTGAGCGCTGTATCAAGAAATTCGATCACACGGTTCAATTTGATCGGGTGATAGTTGTGGAAAGGTCAATGAGACAGTGTCCCAGGACTCCAACTCCTGGCAAGTACAGTGGTACAAGATACGACCATGAACAGAGAGGGAGACAAACTCTTAGTCATTCACCTAGGCAACAGCGGGATAAACATCGTTATTCAAGGGACCGATCTCGTAGTCTGTCACCTGTAAGAAAGGAGGATAGATATCGTTTTTCAAGGGATCGATCTCGTAGTCAGACTCCGATACAAAAGGAGGATAGTTATTCAACGGACCGGCGAGGAAGATCACGTTCTCCACGATCACATATGAGGCAGAGGGATTAG 678 0.4587 MVHTAESLVGLEADDQDQVHGNAVPGVALQKLTSYLMNLLSSQDSPDWRNPGNNLFVNFLPWWTTERDLQQLFSTQGEVVDSHLVRDFHTKESRGFAFVTMATTDDAERCIKKFDHTVQFDRVIVVERSMRQCPRTPTPGKYSGTRYDHEQRGRQTLSHSPRQQRDKHRYSRDRSRSLSPVRKEDRYRFSRDRSRSQTPIQKEDSYSTDRRGRSRSPRSHMRQRD 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00325 225 SMART rrm1_1 54 127 IPR000504 GO:0003723
Vian3g00325 225 SUPERFAMILY RNA-binding domain, RBD 39 153 IPR035979 GO:0003676
Vian3g00325 225 CDD RRM_SF 55 127 - -
Vian3g00325 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Vian3g00325 225 Gene3D - 13 137 IPR012677 -
Vian3g00325 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Vian3g00325 225 MobiDBLite consensus disorder prediction 131 225 - -
Vian3g00325 225 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 51 219 - -
Vian3g00325 225 MobiDBLite consensus disorder prediction 145 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00325 Vian-Chr3 3142327 3144762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00325 53 132 Eukaryotic Initiation Factors Gene Family AT2G23350 33.750 7.27e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00325 - K12897 vun:114191431 163.31