Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00310 ATGGGTTTGCAAAGCGAACTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTGTTGGCGCAGATAGCCATGTTCGTCAACTACCTCCGCTCGATGCTCTTCGCGCTGTTGCAATCCCTAGGTCTCGCCCGATTCCACACGCACCAGATCGTCGACGACCGCTTCCTCGCCGCCGTCGGATCCGGCCTCGCCGGCCTCATCATGCTCTCCGATCAGCTCGCCCTCAACAACCAATTATTCTTCTACAAAGGAGCCGCCCACGACCACACCTGCGTGGTGTGCCAGGCCACCTTCCAGGACGGCGACCAGCTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCCCTGCTTCGACGGCTGGCTCCACCACTACAAGTTCAACTGTCCTCTCTGCCGCTCCCCGCTCCTTTCCGACGAGCGCGTGGCCCTCACCGAACGCCGCCTCGGCCAACAACTCATCTCTTGGTTCTCCCTTCACTGA 486 0.6173 MGLQSELNDVSSGSIPLLVLAQIAMFVNYLRSMLFALLQSLGLARFHTHQIVDDRFLAAVGSGLAGLIMLSDQLALNNQLFFYKGAAHDHTCVVCQATFQDGDQLRMLPCRHVFHRPCFDGWLHHYKFNCPLCRSPLLSDERVALTERRLGQQLISWFSLH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00310 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Vian3g00310 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 143 IPR013083 -
Vian3g00310 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 83 144 - -
Vian3g00310 161 Pfam Ring finger domain 91 134 IPR001841 -
Vian3g00310 161 SUPERFAMILY RING/U-box 86 140 - -
Vian3g00310 161 SMART ring_2 92 133 IPR001841 -
Vian3g00310 161 CDD RING-H2_PA-TM-RING 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00310 Vian-Chr3 2977486 2977971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00310 1 161 C3H Transcription Factor Family AT1G15100 48.171 6.43e-48 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00310 K16282 - gmx:100803789 277.715