Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00309 ATGAATAAGCTCCGAAAGAGCGTTCTGTTAGGAAGTGTGTCAGAGACGGTTTCTTTCTTTCTTTCCATGGCACCAAACACACTCGCCTCAACCATTACTACTATAAAATCTCTTCTTCCACTTCTCTCTCTCTCTCTCAAATCGCTTTCTCTTTCTAAAATCTCCTCAGTCCTCGACAGAAGCTCAAGCAAACAGCGAGAATCGAGAAAAATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAATGGCGGATTCGGCCCCGCTGCCGTCTCTGGTCAATTGCCGTCAAACGGAGGCTACGGTTCGCTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAACTGCAGCAACGGAGGCGGCGTTTCGCTGTACCCGTACTCCGACTCAACAACTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGTCAGCTCCGGGCAGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAGTCAGTACGCCGCCGCCGGCAGTGGCTCCTCCGGCCAGACTCAACCGACGCTGTTCGACGTCTTGCATGGCTTCCGCAGCCTCCACATTGGGGAAGGCAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATTTTGAATAATAATAATAACAAGGACCTGCAGGAAGCGTCGGACGAGAGTCCAACGAGCGTGATGGAGAATAACGTGGTGGAGGTTGAGAGATTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCTCTTGCCACCAATAATAATGTAACTCGCAATAAAGGTGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTCAGAAGGTGTATGTGCGGGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTATAACCAAGGGATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACTGGTACATGCCCATACGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCGGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1305 0.5134 MNKLRKSVLLGSVSETVSFFLSMAPNTLASTITTIKSLLPLLSLSLKSLSLSKISSVLDRSSSKQRESRKMLNKDACSPSSNGGFGPAAVSGQLPSNGGYGSLYSALSNDNLPSLSANCSNGGGVSLYPYSDSTTQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLESQYAAAGSGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNILNNNNNKDLQEASDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNVTRNKGATRPRATATPPEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00309 434 FunFam zinc finger CCCH domain-containing protein 15-like 343 382 - -
Vian3g00309 434 ProSiteProfiles Zinc finger C3H1-type profile. 387 415 IPR000571 GO:0046872
Vian3g00309 434 SUPERFAMILY CCCH zinc finger 346 381 IPR036855 GO:0046872
Vian3g00309 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872
Vian3g00309 434 SUPERFAMILY CCCH zinc finger 383 417 IPR036855 GO:0046872
Vian3g00309 434 Coils Coil 159 186 - -
Vian3g00309 434 PANTHER CCCH ZINC FINGER/TIS11-RELATED 145 421 IPR045877 GO:0003729
Vian3g00309 434 FunFam Zinc finger protein 36, C3H1 type-like 1 383 419 - -
Vian3g00309 434 MobiDBLite consensus disorder prediction 60 82 - -
Vian3g00309 434 Gene3D - 344 382 - -
Vian3g00309 434 Gene3D - 383 419 - -
Vian3g00309 434 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Vian3g00309 434 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Vian3g00309 434 SMART c3hfinal6 387 414 IPR000571 GO:0046872
Vian3g00309 434 MobiDBLite consensus disorder prediction 240 262 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00309 130 429 C3H Transcription Factor Family AT1G68200 49.026 7.08e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian3g00309 zf-CCCH 3.7e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00309 K18753 - gmx:100819250 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00309 3 2947957 2950883 Vian3g00309 3 2947957 2950883 ECH