Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00306 ATGATTTGCCATCAAGAAGGCACGTTCAAACTGATAATGGCTAAAGCTGATATGGCTGACATGGATATCCCTTCTTTTCTGGATGTAGTAGTTCAAAAGGATCTTCCTGTCATCTTCATCTATTCTGGAGTGTTTGATGATGTAAATAAGAAAGCTTTAGCTACAGGATTGTGTTATTTCCTTAAGGAGCCAATCACTCCGAATGATCTTCAATATCTCTGGCAACATGTGTATCACTCAAGAGCCTATTCACCCAAAAACACTCGAAATGCAGACTTCCATGCAAAGGGATTACAGAATACCCAGATGAAACAGGTGAGAAACGCCCAATGCCAGGTTCTTGGAGCAAAAAGCGGAAGAAGCGATGCTGATACATTGGGCAAAGAAAAAGGAAAGAAAACCCTCAACAACACAATGGCAACCACAAAGTGCAAAGGTCACAAAGAATATGGAAAAAGAAAGCATGATGACTATGCAGGCAAGAAAAAAGAGAAGAGAGATGTTGTGCAGGAAAAGCCAGATTCGTTGGGATCAGCCAAGATGAACATTAACAACCTCAATGAATATTTCAGAATGTCTGAGCACAAAAAACGTTTGAGCGTTTGGACTCCTGAGTTGCATCAAAAGTTTCTAGAAGCAGTGAACGAATTGGGAGACAACATTGCTCGTCCAAAACAGATATTAGTTCGGATGAATGCCAGTGAGCCTTACCTCACTGTTCGCCAAGTTGCAAGTCATTTGCAGAAATACAGATTGCGTTTGAAAGGTGAAGAGAGCTCTCTCAATTCTGATTTGCCTAGAGTATCATCCTCAAGACACAAAGCCAACTCTTCTTCGTCTGAAGGATCCACCTTGGAAACAAAAGGTCTCCCAGCACCAAAAGTTTTCTTGAATGTGAACCATAATCAAGATCAGATTCCAGTGAACAGCTTGGGAATGGAATTCACAGATTCTTGGGATTCACAACCAATGTCAGGTGCTTCAATGGATTCGAATATACCTGGAACTGATTTATGTGATTTCGTAGAAACGTTTCTGGAAGATTCTGATTGTTTCAATTTGCATAAATATGAATCCAATCCTGCTGCTGTTGATCAATGTGCTGAGATGCTAAGAAATGTTCTAGAAGGGGTTCCCCTTAATTAA 1146 0.4049 MICHQEGTFKLIMAKADMADMDIPSFLDVVVQKDLPVIFIYSGVFDDVNKKALATGLCYFLKEPITPNDLQYLWQHVYHSRAYSPKNTRNADFHAKGLQNTQMKQVRNAQCQVLGAKSGRSDADTLGKEKGKKTLNNTMATTKCKGHKEYGKRKHDDYAGKKKEKRDVVQEKPDSLGSAKMNINNLNEYFRMSEHKKRLSVWTPELHQKFLEAVNELGDNIARPKQILVRMNASEPYLTVRQVASHLQKYRLRLKGEESSLNSDLPRVSSSRHKANSSSSEGSTLETKGLPAPKVFLNVNHNQDQIPVNSLGMEFTDSWDSQPMSGASMDSNIPGTDLCDFVETFLEDSDCFNLHKYESNPAAVDQCAEMLRNVLEGVPLN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00306 381 Gene3D - 193 256 - -
Vian3g00306 381 FunFam Two-component response regulator 193 257 - -
Vian3g00306 381 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Vian3g00306 381 MobiDBLite consensus disorder prediction 118 165 - -
Vian3g00306 381 MobiDBLite consensus disorder prediction 150 165 - -
Vian3g00306 381 MobiDBLite consensus disorder prediction 261 288 - -
Vian3g00306 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Vian3g00306 381 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 100 298 IPR044841 GO:0003700|GO:0006355
Vian3g00306 381 SUPERFAMILY CheY-like 6 92 IPR011006 -
Vian3g00306 381 MobiDBLite consensus disorder prediction 262 286 - -
Vian3g00306 381 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Vian3g00306 381 Gene3D - 3 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00306 Vian-Chr3 2917700 2920137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00306 1 267 Response Regulator Gene Family AT1G68210 27.899 2.29e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian3g00306 Myb_DNA-binding 4.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00306 - - vra:106770703 600.897