Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00296 ATGTTCCCTTTTGTTTTGTTGTTTTACTTTTTCCTTCTTTGCTGCAACTCTATTGCACCTTTGGTGCATTCTCTGAATGCCGAAGGCTCTGTGCTTTTGACACTAAAGCAGTCGCTCACCGACCCTCAAGGCTCCATGAGTAACTGGAATTCCTCTGATGAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAGAATGTTGTGTCCATCAGCATCCCGAAGAGGAAACTCTTTGGCTCTCTCCCTTCTTCTCTGGGATCTCTCTCCCAGCTCCGCCATGTCAACTTCAGGAACAACAAGCTTTTCGGAGACTTGCCTACACAGCTCTTTCAAGCTCAGGGACTGCAAAGCTTGGTGCTTTATGGTAATTCATTTTCTGGGCCTGTTTCTAGTGAGATTCAGAATCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTTAACGGGTCATTGCCTGCTGCAATTGTCCAATGCAAGAGACTCAAGTCCCTTGTTCTCAGTCAGAACAATTTCTCTGGCTCCTTGCCAGATGGGTTTGGCACTGATTTGTCTTCTCTGGAAAGGCTAGACCTTTCTTTCAATCACTTCAATGGGTCAATTCCCAGTGATTTGGGAAATCTGTCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCCAGCCTTGGTAATCTGCCTGAGAAGGTTTACATTGATCTTACTTTCAACAATTTAAACGGTCCAATTCCTCAGAATGGTGCTTTAATGAACAGAGGACCAACTGCCTTTATTGGCAATCCTGGTCTATGTGGTCCTCCTTTGAAGAATTCATGCGGTCCTGATACTCCATCTGCTAGTTCACCTCCATCGTTTCCATTTATTCCAAATAACAGTTCGGCTGAGGGTTCCATGGGAAGTGAGAAAAATAAAGGGCTAAGTACGGGAGCTGTGGTTAGCATTGTTGTGGGTGATATAATTGGAATTTGCCTCTTAGGTTTGCTGTTCTCTTTTTGCTACTCGAGGGTTTGTGGTTTTAACCAGGATCTTGATGAAGATGGAATTAACAAGGGAAGCAAAGGGAGGAAAGAGTGTTTCTGCTTCAGAAAGGATGAATCCGAGGCCCTGTCTGATAATAATGTTGAGCAATATGATCTTGTCCCATTAGATTCCCATGTGACTTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTTTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGGCTTGCTTTGGCTGTGAGGAGATTGGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACCGAGGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATATCCAACGGAAGCCTTGATACAGCAATTCATGGGAAGGCTGGACTTCTGACATTTGCACCACTTTCTTGGTCCTATCGATTGAAGATCATGAAAGGAACCGCAAGAGGATCGGTCTATCTGCATGAATTTAGCCCCAAAAAATATGTACACGGAGACCTGAAGCCAAGTAACATACTTCTTGGACACGACATGGAACCCCACATTTCTGACTTTGGAGTTGGGCGCCTTGCAAATATTGCTGGAGGGTCGCCAACCTTGCAATCCAACCGAGTGGCTGCAGAGAAACAACATGGAAGACAAAAGAGCATCTCCACTGAAGTCACTACCGGTGTGATGGGAAACGGTTATATGGCTCCAGAAGCACTGAAAGTTGTGAAGCCATCACAGAAATGGGATGTTTACTCATATGGAGTGATATTGTTGGAAATGATCACAGGAAAACCATCGATTGTCCAGTTGGGGAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGAGGAAAAGAAGCCACTCGTGGAGGTGTTAGACCCTTACTTGGCAGAAGATGCAGATAAGGAGGAGGAGATTATTGGAGTTTTGAAGATTGCAATGGCTTGTGTCCATAGCAGCCCTGAAAAGAGACCTACGATGAGGCACGTGCTTGATGTTTTGGATAGATTGACTATTTCCTCTGATTGA 2130 0.4385 MFPFVLLFYFFLLCCNSIAPLVHSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDENPCSWNGITCKDQNVVSISIPKRKLFGSLPSSLGSLSQLRHVNFRNNKLFGDLPTQLFQAQGLQSLVLYGNSFSGPVSSEIQNLRYLQTLDLSQNFFNGSLPAAIVQCKRLKSLVLSQNNFSGSLPDGFGTDLSSLERLDLSFNHFNGSIPSDLGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTFNNLNGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCGPDTPSASSPPSFPFIPNNSSAEGSMGSEKNKGLSTGAVVSIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDEDGINKGSKGRKECFCFRKDESEALSDNNVEQYDLVPLDSHVTFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYISNGSLDTAIHGKAGLLTFAPLSWSYRLKIMKGTARGSVYLHEFSPKKYVHGDLKPSNILLGHDMEPHISDFGVGRLANIAGGSPTLQSNRVAAEKQHGRQKSISTEVTTGVMGNGYMAPEALKVVKPSQKWDVYSYGVILLEMITGKPSIVQLGNSEMDLVQWIQFCIEEKKPLVEVLDPYLAEDADKEEEIIGVLKIAMACVHSSPEKRPTMRHVLDVLDRLTISSD 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00296 709 Pfam Protein kinase domain 411 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00296 709 ProSiteProfiles Protein kinase domain profile. 405 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00296 709 PANTHER OS05G0588300 PROTEIN 134 702 - -
Vian3g00296 709 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515
Vian3g00296 709 SMART serkin_6 410 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00296 709 SMART LRR_typ_2 90 114 IPR003591 -
Vian3g00296 709 SMART LRR_typ_2 138 162 IPR003591 -
Vian3g00296 709 SMART LRR_typ_2 187 211 IPR003591 -
Vian3g00296 709 SUPERFAMILY Protein kinase-like (PK-like) 410 701 IPR011009 -
Vian3g00296 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Vian3g00296 709 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Vian3g00296 709 MobiDBLite consensus disorder prediction 295 310 - -
Vian3g00296 709 MobiDBLite consensus disorder prediction 281 310 - -
Vian3g00296 709 CDD STKc_IRAK 411 704 - -
Vian3g00296 709 FunFam Leucine-rich repeat receptor-like protein kinase 388 480 - -
Vian3g00296 709 Gene3D Ribonuclease Inhibitor 19 77 IPR032675 -
Vian3g00296 709 Gene3D Ribonuclease Inhibitor 78 285 IPR032675 -
Vian3g00296 709 Gene3D Phosphorylase Kinase; domain 1 373 480 - -
Vian3g00296 709 Gene3D Transferase(Phosphotransferase) domain 1 481 708 - -
Vian3g00296 709 FunFam Leucine-rich repeat receptor-like protein kinase 25 181 - -
Vian3g00296 709 SUPERFAMILY L domain-like 27 278 - -
Vian3g00296 709 FunFam Leucine-rich repeat receptor-like protein kinase 189 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00296 Vian-Chr3 2818599 2820858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00296 7 709 Receptor kinase-like Gene Family AT2G01210 66.992 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian3g00296 Pkinase 1.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00296 - - gmx:100792873 1234.17