Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00288 ATGAGTCCGGTTCATGGATTCGTATTACTGCTTTTGTTTTCTAAGTTTATGCCACTTCTCTTGGCAGCCGGGGACCATGGAAGGTGTTCATTTCCTTGTGGATATCTTGGCAATCTCACTTTCCCTTTTACTATAACTGGACGCCCCGACTGTGGCTTCTTGTCCATACGAAATTGTAGTGATGATCCACATACGCCCAAATATATCCAATTACAACCAAATGGAGGTTGGGTTCAGGTTGTAACCACATATTCGCTTATTAGTAGCTCTACTATCCGTTTCGCAACTTTTCAATTTAGAGACAAATATTTTTATGATCTTCTGCAGAACCGAAGTTGTGAAGTTTTCACAAACAGTTATACTCTTCCTCTTAAATCTCACTTTGCTGCTTTTAGATTGTTATACAACACAAGTCTGTTCTTGTGCAACAAGACCCTCAATGCCACAAATAAAAATATGAGCAAGTATAATGCGTGCCTTGGCTACGATATCTACTACAACCACTTCAATAAAACAGACGAGGATGCGTCTCAGAGTTCTTTGAAAGCGTGTAAAAAGGTCCTGCTTCCAATTAAAGACGTGCCTGACGCCAATGACCCATTTACTTTCGTAACTGGCGATGTCACTGTTGTAGTAACATTAACAGATCAATGTTCAGATTGCCACTATCGCAAAAGAGGGCAGTGTCAACTTGACAGCAGAGAGCAATTTTGTTGTGCCAATGCTCCGGAAAAAAGCTCGCGTTGGAAGGTCAAACTGGCTTTAGGTTTAGGCATTGGAGTCCCATGCATGATGTTAATTGGGTTGTTGTTTTTCCTTCTACTCCGCAAACGAAAACATGCTACCTCAGGCGGACAACTAAAGTCAAGAGATTCTTATTCAGATTCCTCCTCCATTTCTCTTCGAGCAAATAGTGCCGAATACTTTGGAGTTCCACTCTTCTCTTACGCGCAGCTTAAAGAAGTGACAAACAATTTCGACCATGCTCAGGAACTTGGAGATGGAGGCTTCGGTACTGTCTACTATGGGAAACTCCCAGATGGAAGGGAAGTTGCGGTTAAGCGGTTATACGAGCACAATTGGAGGCGAGTAGAACAGTTCATGAACGAAGTTAAAATCCTCACACGGTTGCGTCACAAAAATCTAGTGTCACTCTACGGGTGCACTTCACGGCACAGCCGTGAACTCCTACTTGTGTACGAATACATTTCAAACGGCACCGTAGCATGTCATCTCCACGGTGGATTAACCAAGCCTGGCTTTCTACCATGGCCTACACGTATGAAAATTGCCATAGAAACTGCCAGTGCATTGGCTTATCTCCACGCCTCAGACATCATCCACCGTGACGTGAAAACAAATAACATTCTCCTGGACAACAACTTCTGTGTTAAGGTAGCAGATTTTGGTCTTTCAAGAGACTTCCCAAACGATGTAACACATGTCTCCACAGCTCCCCAAGGATCCCCGGGTTACCTTGACCCTGAATATTATAGCTGCTACCAGCTGACTATTAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTGCTCTCATCGAAGCCTGCTGTTGATATGAACAGGAGTAGGGATGAGATTAACTTGTCAAATCTAGCAGTTAGGAAGATTCAAGAAAGTGCAATTGGTGAGCTTGTAGATCCTTGCCTTGGTTTTGATTCGGACAGTAGGGTTAAAGGGATGATAGTTTCAGTGGCAGGGTTGGCTTTACAGTGTTTGCAGAGGGAAAAGGAGTTGAGACCTTCGATGGATGAGGTGTTGCATGAACTGCAGAGAATTGAGAGTGGGAAGGATGAGATAGATGTTGATAATGGAGGAGTTGCAGAAAGTCGTGCACATTCACCACCACCGGCTTCACCAGAGTGGGATGAAGCTGTACTGTTGAAGAATACGAATCCTACTTCCCCTGACACTGTCACTGATAAATGGGAAAGTAAATGTACTACACCTAATATAAGTGGCTAA 1989 0.4349 MSPVHGFVLLLLFSKFMPLLLAAGDHGRCSFPCGYLGNLTFPFTITGRPDCGFLSIRNCSDDPHTPKYIQLQPNGGWVQVVTTYSLISSSTIRFATFQFRDKYFYDLLQNRSCEVFTNSYTLPLKSHFAAFRLLYNTSLFLCNKTLNATNKNMSKYNACLGYDIYYNHFNKTDEDASQSSLKACKKVLLPIKDVPDANDPFTFVTGDVTVVVTLTDQCSDCHYRKRGQCQLDSREQFCCANAPEKSSRWKVKLALGLGIGVPCMMLIGLLFFLLLRKRKHATSGGQLKSRDSYSDSSSISLRANSAEYFGVPLFSYAQLKEVTNNFDHAQELGDGGFGTVYYGKLPDGREVAVKRLYEHNWRRVEQFMNEVKILTRLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGGLTKPGFLPWPTRMKIAIETASALAYLHASDIIHRDVKTNNILLDNNFCVKVADFGLSRDFPNDVTHVSTAPQGSPGYLDPEYYSCYQLTIKSDVYSFGVVLIELLSSKPAVDMNRSRDEINLSNLAVRKIQESAIGELVDPCLGFDSDSRVKGMIVSVAGLALQCLQREKELRPSMDEVLHELQRIESGKDEIDVDNGGVAESRAHSPPPASPEWDEAVLLKNTNPTSPDTVTDKWESKCTTPNISG 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00288 662 MobiDBLite consensus disorder prediction 636 662 - -
Vian3g00288 662 MobiDBLite consensus disorder prediction 602 662 - -
Vian3g00288 662 Pfam Protein tyrosine and serine/threonine kinase 329 596 IPR001245 GO:0004672|GO:0006468
Vian3g00288 662 ProSiteProfiles Protein kinase domain profile. 326 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00288 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Vian3g00288 662 Gene3D Transferase(Phosphotransferase) domain 1 403 617 - -
Vian3g00288 662 SMART serkin_6 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00288 662 FunFam Wall-associated receptor kinase-like 20 403 610 - -
Vian3g00288 662 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 298 402 - -
Vian3g00288 662 SUPERFAMILY Protein kinase-like (PK-like) 301 598 IPR011009 -
Vian3g00288 662 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Vian3g00288 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 656 IPR044652 GO:0004672
Vian3g00288 662 CDD STKc_IRAK 332 601 - -
Vian3g00288 662 Gene3D Phosphorylase Kinase; domain 1 300 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00288 Vian-Chr3 2724092 2727140 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00288 31 662 Receptor kinase-like Gene Family AT1G25390 47.567 3.88e-173 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian3g00288 PK_Tyr_Ser-Thr 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00288 - - vra:106771857 1122.84