Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00287 ATGGCTATCGTATATTTGTTCAACTTCCTCTTGTTTTATCACCTTCTACTCATCCTCTGTGCTGGTTATGGATATGGGCACCAAGGTTGTCCACACTCCTTTACTTGTGGCAATCTTGGGTCTTTCCATTACCCTTTTACCAAGGCAGAACAACCAGACTGTGGCTTGATACCCATACATGGTTGTGATAATCCTCTATCAATCCAAAAATTGATCCAGCTGGAGAAAAATGGAAAATACTTTGTGCTTACAGGCAACATTCAGCAGGATGGGATTTCAATTTCGGATGAAGATTTGCACCAGCGTTTACAAAACAACATCTGTGACACTTTGAATAATAGCTACAGTCTTCAATCCCATTCTCCTTTATACTCTTATTATATAAAATATAATGTGACACTGTTCCGATGCAAACATGACCTCAATATGAAACCCCCACCACATTATTTTAATCACTCCTGCACTCAGTATGGTTATGATATCTATTATGACAGCCTTTCCTTACCAAAGAATGATGAAGCTCATAAACTTTTCTCATCCTGCTCAGTTCTTCACTTAGCAAAAAAGGACAAGGCCGATACCACAGACATTCTATCGTTTTTATCTGCTCAGATGGTTGTTCAAGTAGTATTATCTAAGGATTGTGATGAGTGCTATAATCACAGAGGAGGTCAATGTTATCTTGACCGCGATCATCAGTTCTACTGTCACAAAGAGCCAAAGCATAGCAGTAAAACTTTGAGGCTGGTACTTGGACTTGTAACAGGTTTATGCGTGATATTATTAGCCATAGTGCTAACTGGATGCCTTATATTTAGACGAAAACGCATTCCTTCAGGTCCTCAACACCAATCGAGAAACGCAGACACTGATTCAATTGGTCCCAGCTCAAATCCAGACCCCGAAAATTGCAGGTTCTACTACAGAGTCCCTCTCTTCTCTTACAAGGAGCTTAAAGAAGCTACATACAATTTCCACAACACCAGGCAACTTGGAAGTGGAGGCTTTGGAACCGTTTACTATGGAAAACTGCTAGATGGACGAGAAGTTGCTATCAAGCGTCTCTATGAGAACAACTATAGGCGAGTTGAACAGTTCATGAACGAAGTTCACATCCTCACTCGCTTGCGCCACACAAATCTGGTGTCCCTCTATGGCTGCACTTCACATCGCAGTCGTGAGCTACTGCTCGTGTACGAACACGTTCCAAATGGCACTGTTGCTTGCCATCTCCACGGTGATTTTGCAAGGCCACACACTCTTCCATGGCACATAAGAATGAAAATTGCGATAGAGACCGCAAGTGCATTGTGTTATCTCCATGCTTCTGACATCATCCACCGTGATGTCAAAACCAAAAACATTCTCCTTACCCAAAGTTTCAGTGTTAAGGTTGCTGACTTTGGTCTTTCAAGGCTGTTCCCGAATGATGTCACACATGTCTCCACTGCTCCACTAGGGACCCCAGGTTACCTTGATCCGGAATATCACGAATGCTACCAGCTTACAAGCAAGAGTGATGTGTATAGTTTTGGCGTTGTGCTTATTGAACTGATATCTTCTAAGCCGGCTGTTGATATGAGCAGGCATAGGGATGAGATAAACTTGGCTAACTTGGCAATGAAGAAGATTCAGCAAAGTGCATTTAGTGAGCTGGTTGATCCTTCTCTTGGTTTTGAGTCGGACAGTGAGGTAAAGAGGATGATGATTTCAGTGGCAGAATTGGCCTTTCAGTGTTTGCAACGAGACAAAGATTTGAGACCTTCAATGGACGAGGTTTTGAAGGTGCTGATGAGAATTGAAAATGATACGCCTGAGCATCTGGATGAAGAACAGTTAAGTCCACCCTCTCTACCTTCACCAGATTGGGATGAGAATGGATTATTGAAAAACATGACGGTACAACTTTCACCTAAAGCCGTCACTGATAGATGGCACAGTGAATCTACTGCCTCTAATGCCAGTGCTTAA 1971 0.4247 MAIVYLFNFLLFYHLLLILCAGYGYGHQGCPHSFTCGNLGSFHYPFTKAEQPDCGLIPIHGCDNPLSIQKLIQLEKNGKYFVLTGNIQQDGISISDEDLHQRLQNNICDTLNNSYSLQSHSPLYSYYIKYNVTLFRCKHDLNMKPPPHYFNHSCTQYGYDIYYDSLSLPKNDEAHKLFSSCSVLHLAKKDKADTTDILSFLSAQMVVQVVLSKDCDECYNHRGGQCYLDRDHQFYCHKEPKHSSKTLRLVLGLVTGLCVILLAIVLTGCLIFRRKRIPSGPQHQSRNADTDSIGPSSNPDPENCRFYYRVPLFSYKELKEATYNFHNTRQLGSGGFGTVYYGKLLDGREVAIKRLYENNYRRVEQFMNEVHILTRLRHTNLVSLYGCTSHRSRELLLVYEHVPNGTVACHLHGDFARPHTLPWHIRMKIAIETASALCYLHASDIIHRDVKTKNILLTQSFSVKVADFGLSRLFPNDVTHVSTAPLGTPGYLDPEYHECYQLTSKSDVYSFGVVLIELISSKPAVDMSRHRDEINLANLAMKKIQQSAFSELVDPSLGFESDSEVKRMMISVAELAFQCLQRDKDLRPSMDEVLKVLMRIENDTPEHLDEEQLSPPSLPSPDWDENGLLKNMTVQLSPKAVTDRWHSESTASNASA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00287 656 MobiDBLite consensus disorder prediction 281 299 - -
Vian3g00287 656 FunFam Wall-associated receptor kinase-like 20 402 610 - -
Vian3g00287 656 ProSiteProfiles Protein kinase domain profile. 325 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00287 656 SMART serkin_6 325 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00287 656 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Vian3g00287 656 SUPERFAMILY Protein kinase-like (PK-like) 308 620 IPR011009 -
Vian3g00287 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vian3g00287 656 Gene3D Phosphorylase Kinase; domain 1 300 401 - -
Vian3g00287 656 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 650 IPR044652 GO:0004672
Vian3g00287 656 MobiDBLite consensus disorder prediction 279 300 - -
Vian3g00287 656 MobiDBLite consensus disorder prediction 605 627 - -
Vian3g00287 656 Gene3D Transferase(Phosphotransferase) domain 1 402 611 - -
Vian3g00287 656 Pfam Protein kinase domain 325 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00287 Vian-Chr3 2718628 2721292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00287 29 656 Receptor kinase-like Gene Family AT1G25390 48.195 7.82e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian3g00287 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00287 - - gmx:100791822 1003.82