Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00286 ATGAATGAAATTGAGATCCTTTCTCGCTTGCGCCACAGAAATCTCGTGTCCCTTTATGGCTGCACTTCACGTCACGCCCAAGAGCTGTTGCTTGTGTATGAGTACATTCCAAATGGCACAGTTGCTAGCCATCTCCACGGTGAATTAGCAAGAGTTGGTTTGCTGACATGGCCCATTCGAATGCAAATTGCCATAGACACTGCTGCTGCACTCTCCTATCTCCATTCTTCTAACATCATTCACCGTGATGTGAAAACCAATAACGTTCTGCTTGACATTAATTTTTCCGTTAAGGTGGCAGATTTTGGGCTTTCAAGATTGTTTCCCAATGATGTTAGTCACGTGTCCACAGCTCCGCAGGGATCTCCGGGGTATCTTGATCCTGAATATTTTCAATGTTACAGGCTCACCGATAAGAGTGATGTGTATAGCTTTGGGGTTGTGCTAATGGAGCTAATATCATCCATGCCAGCAGTTGATGCAGCCAGGGAAAGGGACGAAGTTAACTTAGCAAGTTTTTTCATGACAAAGATTCAAAAAGGAAAGCTTCGTGAGCTTGTAGACCCATCCTTTGGATTTGAGTCAGATGAAGTCGTTAAAAGGATGGTGACTTCAGTGGCAGAATTGGCCTTTCGGTGTGTGCAGGGAGACAACGAACTGAGGCCTTCTATGGACGAAGTTCTGGAATTCCTCAAGAAAATCCAAAGTGGGAATTATGAGTCTGAGAATCCAGATAAAGGAGATCATGGTGGTAATGTTATGTCGTCTACCTCAAGGGAAGAAGTGCAACCACCACCATCAGTTTCACGGAATTCGGGTCAAATTGAAATTTTAATGAATAATAAGCTTTCTTCGCCAAGGTCCTTCACCGAGAAATGGGAAAGTGAATCTACAACGCCCAATGTCAGTGGTTAA 915 0.4393 MNEIEILSRLRHRNLVSLYGCTSRHAQELLLVYEYIPNGTVASHLHGELARVGLLTWPIRMQIAIDTAAALSYLHSSNIIHRDVKTNNVLLDINFSVKVADFGLSRLFPNDVSHVSTAPQGSPGYLDPEYFQCYRLTDKSDVYSFGVVLMELISSMPAVDAARERDEVNLASFFMTKIQKGKLRELVDPSFGFESDEVVKRMVTSVAELAFRCVQGDNELRPSMDEVLEFLKKIQSGNYESENPDKGDHGGNVMSSTSREEVQPPPSVSRNSGQIEILMNNKLSSPRSFTEKWESESTTPNVSG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00286 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 79 91 IPR008271 GO:0004672|GO:0006468
Vian3g00286 304 SMART serkin_6 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00286 304 Gene3D Phosphorylase Kinase; domain 1 1 36 - -
Vian3g00286 304 SUPERFAMILY Protein kinase-like (PK-like) 1 242 IPR011009 -
Vian3g00286 304 ProSiteProfiles Protein kinase domain profile. 1 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00286 304 FunFam Wall-associated receptor kinase-like 20 36 244 - -
Vian3g00286 304 PIRSF TyrPK_CSF1-R 53 298 - -
Vian3g00286 304 PIRSF TyrPK_CSF1-R 1 52 - -
Vian3g00286 304 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 298 IPR044652 GO:0004672
Vian3g00286 304 MobiDBLite consensus disorder prediction 238 304 - -
Vian3g00286 304 MobiDBLite consensus disorder prediction 250 304 - -
Vian3g00286 304 Gene3D Transferase(Phosphotransferase) domain 1 37 256 - -
Vian3g00286 304 Pfam Protein tyrosine and serine/threonine kinase 1 231 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00286 Vian-Chr3 2702025 2702939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00286 1 304 Receptor kinase-like Gene Family AT1G25390 58.824 1.03e-119 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian3g00286 PK_Tyr_Ser-Thr 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00286 - - gmx:100778085 488.034