Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00284 ATGAGTCCGGTTCATGGATTCGTATTACTGCTTTTGTTTTCTAAGTTTATGCCACTTCTCTTGGCAGCCGGGGACCATGGAAGGTGTTCATTTCCTTGTGGATATCTTGGCAATCTCACTTTCCCTTTTACTATAACTGGACGCCCCGACTGTGGCTTCTTGTCCATACGAAATTGTAGTGATGATCCACATACGCCCAAATATATCCAATTACAACCAAATGGAGGTTGGGTTCAGGTTGTAACCACATATTCGCTTATTAGTAGCTCTACTATCCGTTTCGCAACTTTTCAATTAAGAGACAAACATTTTTATGATCTTCTGCAGAACCGAAGTTGTGAAGTTTTCACAAACAGTTATACTCTTCCTCTTAAATCTCACTTTGCTGCTTTTAGATTGTTATACAACACAAGTCTGTTCTTGTGCAACAAGACCCTCAATGTCACAAATAAAAATATGAGCAAGTATAATGCGTGCCTTGGCTACGATATCTACTACAACCACTTCAATAAAACAGACGAGGATGCGTCTCAGAGTTCTTTGAAAGCGTGTAAAAAGGTCCTGCTTCCAATTAAAGACGTGCCTGACGCCAATGACCCATTTACTTTCGTAACTGGCGATGTCACTGTTACAGTAGCATTAACAGATCAATGTTCAGATTGCTACTATCGCAAAGGAGGGCAGTGTCAACTTGACAGCAGAGAGCAATTTTCTTGTGCCAACAGTTACGAGGAAACCAGAAAGAAAATGTGGAAGGTGGCAACAGCTTCGACCGTGGTGGCTGCTGTACTCGTAGTGCTGATGGTCTTGGTTTGCTGCTTCAGGACAAAGATCTTCTATCCTTTGTTTTGGAAGGAAAATCCGACTCATCGCGTTATTGAGGGCATTTTGAAGGAACACGGACCCCTTACCACAGCCAGGTTCAGTTATTTAGAGGTTAAGAAAATGACCAACTCTTTCAGAAACAAATTAGGACAAGGGGGATTTGGTAGCGTGTACAAAGGGAAATTACATGATGGACGTGTTGTTGCAGTAAAAATTTTATCTGTATCTAAAGGCAACGGAGAAGAATTCATCAATGAAGTTGTGAGTATTAGTAGAACTTCACATGTTAATATCATTAGACTTTTAGGATTTTGTTTTGACAATACTCACCGGGCTCTAATATACGAGTTTATGCCTAATGGATCTCTTGACAAGTTCATCTATGAAGACAAAAATGCATCAAAGGATGTTCAACATCTGGATTGGAAAATATTAAATGAAGACAAAAATGCATCAAAGGATGTTCAACATCTGGATTGGAAAATATTAAATGATATTGCAATTGGCATTGCTCGTGGATTAGAGTACTTATATAGAGGCTGCAACACTAGAATTTTACATTTTGACATAAAACCTCACAACATATTACTGGACGAGGATTTCTGTCCAAAAATTGCAGATTTTGGACTTGCAAAAGTGTGTCCTAGAAAAGAAAGTATGGTATCCATATTTGGTGCCAGAGGAACTGCAGGATATATTGCTCCAGAGGTTTTTTCCAGAAACTTTGGTGCTGTGTCACACAAGTCAGATGTTTATAGTTATGGAATGATGATCTTAGAAATGGTTGGAAGAAGAAAGAATATTAAGACAAAAGTAGACCGGTCGAGTGAAATATACTTTCCTCATTGGATTTATAGTCGTCTTGAATCAAATTCAGATCTTGGTTTAGAAAATGTGAGAAATGAAAGTGAAGATGAAATGGTGAGAAAGATGACAATAGTGGGCTTGTGGTGCATACAAAGTCATCCTTCAACTCGACCAACCATAAGCAAAGTGATGGAAATGTTAGAAAGTAAAGTTGATTTATTGCAAATTCCACCTAAACCATTTTTGTCTTCTCCTTCACCATCTCCGCACAATTTGTCATATGAAAGTTTTAATTTATAA 1932 0.3835 MSPVHGFVLLLLFSKFMPLLLAAGDHGRCSFPCGYLGNLTFPFTITGRPDCGFLSIRNCSDDPHTPKYIQLQPNGGWVQVVTTYSLISSSTIRFATFQLRDKHFYDLLQNRSCEVFTNSYTLPLKSHFAAFRLLYNTSLFLCNKTLNVTNKNMSKYNACLGYDIYYNHFNKTDEDASQSSLKACKKVLLPIKDVPDANDPFTFVTGDVTVTVALTDQCSDCYYRKGGQCQLDSREQFSCANSYEETRKKMWKVATASTVVAAVLVVLMVLVCCFRTKIFYPLFWKENPTHRVIEGILKEHGPLTTARFSYLEVKKMTNSFRNKLGQGGFGSVYKGKLHDGRVVAVKILSVSKGNGEEFINEVVSISRTSHVNIIRLLGFCFDNTHRALIYEFMPNGSLDKFIYEDKNASKDVQHLDWKILNEDKNASKDVQHLDWKILNDIAIGIARGLEYLYRGCNTRILHFDIKPHNILLDEDFCPKIADFGLAKVCPRKESMVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMILEMVGRRKNIKTKVDRSSEIYFPHWIYSRLESNSDLGLENVRNESEDEMVRKMTIVGLWCIQSHPSTRPTISKVMEMLESKVDLLQIPPKPFLSSPSPSPHNLSYESFNL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00284 643 SMART serkin_6 318 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00284 643 FunFam PR5-like receptor kinase 393 623 - -
Vian3g00284 643 FunFam serine/threonine-protein kinase PBS1-like 292 392 - -
Vian3g00284 643 ProSiteProfiles Protein kinase domain profile. 318 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00284 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Vian3g00284 643 Pfam Protein kinase domain 322 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00284 643 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Vian3g00284 643 SUPERFAMILY Protein kinase-like (PK-like) 302 612 IPR011009 -
Vian3g00284 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 290 630 IPR045874 GO:0004672
Vian3g00284 643 Gene3D Transferase(Phosphotransferase) domain 1 393 624 - -
Vian3g00284 643 Gene3D Phosphorylase Kinase; domain 1 297 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00284 Vian-Chr3 2673650 2676007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00284 307 627 Receptor kinase-like Gene Family AT4G18250 55.319 1.24e-122 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian3g00284 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00284 - - pvu:PHAVU_007G030300g 895.19