Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00237 ATGGCTGCGAAGGAGGATAATCGAATATTTGTGGGTGGTTTATCTTGGGACGTCACTGAGCGTCAACTCGAGCATGCCTTTTCTCGTTACGGCAAAATTATCGAATGCCAGATCATGATGGAAAGGGATACAGGCCGTCCACGTGGATTTGGGTTTATCACATTTGCAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCTGTCAACAAGGCGCAGCCTAAGATGGGCGGTGATGATATAGACCAAGGTTACAGAGGCAGCTACTCATCGGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGATAGGACAAGATGACTGCTTCAAATGTGGGCGTCCAGGACACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGTCGTGGTCGTGGTGGTGGGGGTTCATTTTCTTCCCATCCAAGGTTTGGAGGTGCTGGTGGACATGGGGATCGCCTTGGTGGTGAACGTGATCGATATGTGGATGACCGTTATGATGGAGGACGCTATGGAGACAGGGATCGTTTTGACAACCGTGACTACAAATATGGCAGCCGTGATCGCTATACTAGTGACAGGTACCCAAGCAGTGGAGATCGTTTTGCAAGCGATCGATATGGCAGTGGCTCGGATCATTACCCACAAAATGGTTATGGCAAGGAAAGAGGGTATGACCGATACAGTGGTCCACGAGGCGGCGCTGATAGGTATGGAAGTGGAATAGCTGGTCGAGATGAAGGAAGGAGTTATAGGGGTAGACCTGGTCCATATGACCGCCCAAGCAGGGGCTCTCGTCCATCACTCGATCGTTACTGA 846 0.513 MAAKEDNRIFVGGLSWDVTERQLEHAFSRYGKIIECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDIDQGYRGSYSSGGRGSYGAGDRIGQDDCFKCGRPGHWARDCPLAGGGRGRGGGGSFSSHPRFGGAGGHGDRLGGERDRYVDDRYDGGRYGDRDRFDNRDYKYGSRDRYTSDRYPSSGDRFASDRYGSGSDHYPQNGYGKERGYDRYSGPRGGADRYGSGIAGRDEGRSYRGRPGPYDRPSRGSRPSLDRY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00237 281 MobiDBLite consensus disorder prediction 161 204 - -
Vian3g00237 281 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 274 - -
Vian3g00237 281 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Vian3g00237 281 Gene3D - 116 142 - -
Vian3g00237 281 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Vian3g00237 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vian3g00237 281 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vian3g00237 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vian3g00237 281 MobiDBLite consensus disorder prediction 139 281 - -
Vian3g00237 281 Gene3D - 1 115 IPR012677 -
Vian3g00237 281 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Vian3g00237 281 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Vian3g00237 281 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Vian3g00237 281 SUPERFAMILY Retrovirus zinc finger-like domains 102 138 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00237 Vian-Chr3 2093864 2098722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00237 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 7.21e-15 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00237 3 2093864 2098722 Vian3g00237 3 2093864 2098722 ECH