Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00231 ATGCTCCCAATCACCTGCATTCTTTTAATGTGCCTTCTAAGTTCTTTCTCACCTCCAATTGAAGCTCTCCTCAACCTCACCGTCTTACCCCACCAACACCCTCACCCAGAAGCCATAGTCCAAGAACTTCAACGGAAGGTCAATGTCTCGTTGTGGAGAAGACAAACACTGTCCAAGGACCAACAACCCGCGTGTCTCACCGGAAATCCAATCGACGACTGCTGGCGCTGCGACCCCAACTGGGCGGCCAACCGGCAGAAGCTGGCGGAGTGCGGCGTCGGGTTTGGCAAAGACGCCATGGGCGGAAAGGGCGGGCAGATCTACGTGGTCACAGACTCGTCGGACCGCGACCCAGCCAACCCTGTCCCCGGCACGCTCCGGCACGCCGTTATCCAAGACGAACCTCTCTGGATCGTGTTCGCTGCGGACATGACCATTAACCTGAAGCACGAGCTCATCTTCAACAGCTTCAAAACCGTCGACGGCCGCGGCGCTAACGTCCACGTCACGGGCCACGGCTGTATCACTCTCCAATACGTCTCCAACGTCATCATCCACAACATCCACGTCCACCACTGCACACCCTCTGGGAACACGAACATACGCGCCAGTCCAACCCACGTGGGTTGGAGGGGGAGATCGGACGGCGACGGCATCTCCATCTTCGGCTCCCGAAAGATCTGGATCGACCACTGCTCACTCTCTTACTGCACGGACGGCCTGATCGACGCCATAATGGGTTCCACTGCAATTACTATTTCCAACAACCACTTCGCCCACCACGACGAGGTGATGCTCTTGGGACACAACGATAAGTACTCCCCCGACCGTGGCATGCAGGTCACCATCGCGTTCAATCACTTCGGCGAGGGTTTGGTGCAGCGCATGCCACGTTGCAGGCTTGGCTACATCCACGTCGTCAACAACGATTTCACCCAGTGGCAGATGTATGCCATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCCGACTCCGATGCCAAAGAGGTGACGAAGCGCGTGGATACAGACGACAGAGAGTGGAGTGGGTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGAGCATTTTTTGTACCATCGGGTGCAGGGCTCAGTGCACAGTATGCAGAGGCCACCAGTGTGCAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGTGTATTCGGTGATCCCAGGGATAATGGGGATCTGTATCCCGGTTTCAACGGTGGTGGGTCCGTGACCGGAGCGACCAGCAAGGGCAACAGTGCGGCGGGGTCCAGCAGTGACGATGGAGACTTCTTCGGAATGATATTCAGAGGAAGCAGCAGCCGTGCAGCGCCACCGTCATCACCGTCTTTGTCCGTTGCATTTGTTTCAACCTTTTTGTCTCTTGTAATTATTCTGATTTTGGACGCTTCGACCAACCATCCCATTCTATGA 1485 0.5603 MLPITCILLMCLLSSFSPPIEALLNLTVLPHQHPHPEAIVQELQRKVNVSLWRRQTLSKDQQPACLTGNPIDDCWRCDPNWAANRQKLAECGVGFGKDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDSDAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGSVTGATSKGNSAAGSSSDDGDFFGMIFRGSSSRAAPPSSPSLSVAFVSTFLSLVIILILDASTNHPIL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00231 494 Pfam Pectate lyase 151 332 IPR002022 -
Vian3g00231 494 Gene3D - 68 410 IPR012334 -
Vian3g00231 494 FunFam Pectate lyase 68 410 - -
Vian3g00231 494 SUPERFAMILY Pectin lyase-like 47 384 IPR011050 -
Vian3g00231 494 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Vian3g00231 494 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Vian3g00231 494 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vian3g00231 494 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Vian3g00231 494 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Vian3g00231 494 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Vian3g00231 494 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Vian3g00231 494 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Vian3g00231 494 PANTHER PECTATE LYASE 18-RELATED 32 409 IPR045032 GO:0030570
Vian3g00231 494 SMART amb_all 143 340 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00231 Vian-Chr3 2035438 2038944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00231 1 482 Polysaccharide Lyase AT3G53190 62.757 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00231 K01728 - gmx:100808438 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00231 3 2035438 2038944 Vian3g00231 3 2035438 2038944 ECH