Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00230 ATGGGAAAGAAAGCTCTCAGACTTCCCTCTCTTTTCAAAACCAAAGAACCACCAAGAAACCATCACCACCACCACCTTCTTCACAATTATCATCCATGGCAATTCATACCCTCTTGCGGCCACTCCAAGACTCTCTCTTTCCGAGGTGCTGCCGACGATGACATCTTCAAGACAGTTAACTCCGTCTTCTTTGACCCTTCCGAGAGTGTCATCGAAACTCCCAAGTCATGGTTCACCACCTCGTCCGAATCCGCCAGCATCTCGACCGAGTCAGAAGACTATTACTGCTGCGACGGGGAGTCTCTGGAGATGTTGGTGCGTGGTGTGAGATCAGAGAGGCTTTTCTTCGAGCCTGGTGACACAAGCTCCATCTTGGAAAAGGCCAAGGCCAGTGGGTTTCCCTTCAAAGAAAGTGTGGTTCTTGCCATGGAATCAGAGGACCCTTACGAGGATTTCAAGAGATCAATGGAGGAGATGGTGGAATCTCATGGAGTAAGAGACTGGGAGGGCTTGGAGGAGCTTTTGACTTGGTATCTCAAGGTCAATGGCAGGAACAATCACGGATTCATAGTCGGTGCTTTTGTTGATTTGCTCTTTAGTTTAGCAGCTTCTAACGATTCTAACTCTTGTTCTGATTCAACTGCATATTCTTCTGCTATTTCTTCTTTTGCTTCTTCCCCCTTGTGTCATGAGATTGTCGAGCATGGCATTGGGAATGATGATGCTGTAACATCTTAG 738 0.4729 MGKKALRLPSLFKTKEPPRNHHHHHLLHNYHPWQFIPSCGHSKTLSFRGAADDDIFKTVNSVFFDPSESVIETPKSWFTTSSESASISTESEDYYCCDGESLEMLVRGVRSERLFFEPGDTSSILEKAKASGFPFKESVVLAMESEDPYEDFKRSMEEMVESHGVRDWEGLEELLTWYLKVNGRNNHGFIVGAFVDLLFSLAASNDSNSCSDSTAYSSAISSFASSPLCHEIVEHGIGNDDAVTS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00230 245 ProSiteProfiles OVATE domain profile. 141 200 IPR006458 -
Vian3g00230 245 MobiDBLite consensus disorder prediction 1 23 - -
Vian3g00230 245 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 51 202 IPR038933 GO:0045892
Vian3g00230 245 NCBIfam uncharacterized plant-specific domain TIGR01568 139 202 IPR006458 -
Vian3g00230 245 Pfam Transcriptional repressor, ovate 145 201 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00230 Vian-Chr3 2017598 2018335 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vian3g00230 Ovate 4.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00230 - - vun:114190765 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02536 2 46028234 46029040 Vian3g00230 3 2017598 2018335 ECH
Vian3g00230 3 2017598 2018335 Vian3g00230 3 2017598 2018335 ECH