Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00219 ATGCTTGGTTCTTTGCAGAAAGTACCTAGTAAGTTTACAAGGAAACATGGGAGTTTTCTGCCAAATCCAGTGTCTCTTAGGCCTCCAGATTCAAAGGAATGGGTAGTATATTGGACACAAGAAAATGGTGAGGTTTGGTTAGATAAGGGTTGGAAAGAGTTTGTTGAAAATTATTCCTTGAGTTATGGATATTTTGTGATGTTCAAATTCAAAGGAACATCCCAAATTGATGTAACCATACTTGATCCAAGTGCTGTAGAATTAGATTATTTTTCTTCTGGTAAGGAATCAGTTAACACCATGAATGTAACTCAGATGGAGCAAGAGCCCAGACCAATGTCATCAATGGTCCCTTCTCAACCTTGTGGAAAAACCCAGAATGTGGAAAGAGACGCCAATGTGCAGCAACAAGTGTATGCAGATAAGGGTGGTCCTTCTCATCAAGGGACAAATGTTCAAAAAATAATCAAGCAGCAACCAAACTGGGTGAAGTCTACTCTAAGTGGAAAATGTCTGAATAAGCCAAGGTCACTAAAAGCTCAGAAAATAACCAAGAATTTTAAATCAAAATATCCTTACTTCACATCTTTGATAGTGCAGGCTAAGTTGGAAGAGAATGCTACGAAGCACGTGCCCAAGTTTTTGAATTGTATGAGGGGCCAGAAGGATGTGATGTTGCAGATGGAGAATAGGGAGTGGTGGGTGAAGTTAATCTGTTGTCGTGAAAAATATGATGTTTTCTCTTCTGGTTGGTCTAAGTTTGCAAAAGAGAGTAATTTGGAAGTGGATGACGTTTGTATCTTTGAGTTGATTGATCCTGCAATTCCGATGCTTCGAGTTCATGTTGTCAAAAGCTAG 858 0.3916 MLGSLQKVPSKFTRKHGSFLPNPVSLRPPDSKEWVVYWTQENGEVWLDKGWKEFVENYSLSYGYFVMFKFKGTSQIDVTILDPSAVELDYFSSGKESVNTMNVTQMEQEPRPMSSMVPSQPCGKTQNVERDANVQQQVYADKGGPSHQGTNVQKIIKQQPNWVKSTLSGKCLNKPRSLKAQKITKNFKSKYPYFTSLIVQAKLEENATKHVPKFLNCMRGQKDVMLQMENREWWVKLICCREKYDVFSSGWSKFAKESNLEVDDVCIFELIDPAIPMLRVHVVKS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00219 285 Gene3D - 174 285 IPR015300 -
Vian3g00219 285 Pfam B3 DNA binding domain 7 75 IPR003340 GO:0003677
Vian3g00219 285 Pfam B3 DNA binding domain 219 274 IPR003340 GO:0003677
Vian3g00219 285 SUPERFAMILY DNA-binding pseudobarrel domain 7 84 IPR015300 -
Vian3g00219 285 SMART B3_2 1 84 IPR003340 GO:0003677
Vian3g00219 285 SMART B3_2 162 284 IPR003340 GO:0003677
Vian3g00219 285 PANTHER B3 DOMAIN-CONTAINING 7 273 - -
Vian3g00219 285 CDD B3_DNA 8 82 IPR003340 GO:0003677
Vian3g00219 285 ProSiteProfiles B3 DNA-binding domain profile. 1 84 IPR003340 GO:0003677
Vian3g00219 285 SUPERFAMILY DNA-binding pseudobarrel domain 188 282 IPR015300 -
Vian3g00219 285 ProSiteProfiles B3 DNA-binding domain profile. 194 285 IPR003340 GO:0003677
Vian3g00219 285 CDD B3_DNA 208 284 IPR003340 GO:0003677
Vian3g00219 285 Gene3D - 3 85 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00219 Vian-Chr3 1885410 1886497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00219 7 284 B3 DNA Binding Superfamily AT3G18990 22.741 3.60e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian3g00219 B3 4.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00219 - - vun:114192490 455.292