Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00216 ATGGACACGTCAAATCCTGCTGTATTTGTGAATGCTCAGTTGATTCCCAACTTCATAGGGAAGAGAGTAAGAACAGTGGTTCAGGTGAATCAATATGGTGGTGAGGTTGCCACAGCAAAATCCACCGATGACTCTCAATTAACAATAAAAGGGTTGCCGCAAGTCCCCATTATGAATTTTATTGAGGTAATCGGTATTGCTGAAAGCAGCAACTCTATTGATGCCGAACTATGGACCGACTTTGGCAACACATTTGATACCAACTCTTTCAATCAGTTGTGCCAACTAGCAAATGGTGAATTCAAAGGCCTGTTTCTCTAG 321 0.4206 MDTSNPAVFVNAQLIPNFIGKRVRTVVQVNQYGGEVATAKSTDDSQLTIKGLPQVPIMNFIEVIGIAESSNSIDAELWTDFGNTFDTNSFNQLCQLANGEFKGLFL 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00216 106 Gene3D - 1 106 IPR012340 -
Vian3g00216 106 Pfam Replication factor A protein 3 1 99 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vian3g00216 106 SUPERFAMILY Nucleic acid-binding proteins 6 105 IPR012340 -
Vian3g00216 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Vian3g00216 106 CDD RPA3 6 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00216 Vian-Chr3 1863172 1863770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00216 1 106 Core DNA Replication Machinery Family AT4G18590 52.830 2.25e-40 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00216 K10740 - gmx:100781484 189.504