Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00195 ATGGGTAGTTGTGGAAGAGAAGGAGCTGTCAGGCAATATATAAGGTCAAAGGTTCCTCGTTTAAGGTGGACTCCCGAGCTGCACCGTTGCTTTGTTCACGCCATTGATAGCCTTGGAGGTCATCAAAAGGCTACTCCTAAGCTCGTTCTTCAGTTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAGAGTCATCTTCAGATGTACAGAAGCATGAGGGGCGACTTGGGGAGACAAGGTAGGACACACTCCCAACATAGGAACCAATCTTTTGAGGAGCACGATGATGGGTGTGTTGATGAAGTGAATGATGTTTGCGTTGAGTATTCATGTTCGAAACCCATGGGAATAGAATCTGATTCCTTCTTCGGCCACAGCAATCTCCCTCCGAAAAGAGCAAGAATCGAGACGAGGAGTTCCATCTCAGAGAGTCTGCAATGCAGCCAAAGATTATGTGATGCAGTTCCAAATCCGTACTGTTTTTATGATTATCTGCAGAAGCCCATGGCTGAGCACAAGGGAATAAAGGAGTTCTGTAAGGCTTCAGCATGGCAGACACAACCCCATTCCTCTCTGTTACTACCACATTTTCCCACCCTCACTTCATTCCAATGTCCTAACCAACAATCAGATTTCCTCCAGGTGACAACATTAAATGAAGGAAAGAGCAGTGGAAAAGGAATTAATGTAGATGTGAACACTGAGACAGGTGAGGCAGAAGTTGAGGATGTAGGAGGGTATGAATTGTCATTGTCGCTTACATTGCCAAATCCTTCACCTCAGAGAAGTAATTGTTCATGTTCAGGCAGTGAGATCAGTGAGACAATCTCATCATGCCCTGCTGCAGGGTTTAGCAACTACAAGGATTGCACCAGTTCATCCAATCTCAATGAAACAATTAATTTGGACCTTTCTTTAGCCCTATGTGGCAATTGA 939 0.4473 MGSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRTHSQHRNQSFEEHDDGCVDEVNDVCVEYSCSKPMGIESDSFFGHSNLPPKRARIETRSSISESLQCSQRLCDAVPNPYCFYDYLQKPMAEHKGIKEFCKASAWQTQPHSSLLLPHFPTLTSFQCPNQQSDFLQVTTLNEGKSSGKGINVDVNTETGEAEVEDVGGYELSLSLTLPNPSPQRSNCSCSGSEISETISSCPAAGFSNYKDCTSSSNLNETINLDLSLALCGN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00195 312 Gene3D - 18 74 - -
Vian3g00195 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 93 IPR046955 GO:0003700
Vian3g00195 312 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Vian3g00195 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Vian3g00195 312 FunFam Myb family transcription factor 17 75 - -
Vian3g00195 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Vian3g00195 312 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00195 Vian-Chr3 1658970 1662187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00195 1 74 G2-like Transcription Factor Family AT1G14600 74.684 7.97e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian3g00195 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00195 - - gmx:100787188 441.039