Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00193 ATGGCTTCTCAGATTCTCAGGACGGATGCTACCCTCCCAATCTTCTTCTTCAAAGTTATTCTTAAAACAAATCTCGAAAGGCTTAAAATACCCAACAAATTCACCCGCAAATATGGAGATGGCTTGCCGAATCCTTTGCTTATGAAGCTTTCAAATGGAACTGCATGGGAAGTGAAGTGGGCAAAACACAACCGTGAGGTTTGGCTGGAAAAGGGCTGGAAAGAATTTGTGCAACATTACTCCCTGGACCATGGACATTTAGTTTGCTTTAAATATGAAGGAACATCTCAGATTCATGTAATCATATTTGACCAAAGTGCAGTAGAAATAGACTATTTCTGTGGCACAGATGATGAAAATGACAACCTTGTTCAAACTGAAGACACTGCTGATGAAAACGACAACCTTGTTCAAACTGAGGACAAACCCAACATGATTTTGGACGAAGAAACACAACAGAAAGCTGAACAAATAGGGGGTGAGAACTATGCTCAAAGAACTTCATCTTTGAACTGGCCAACTCAAACTAGAGCACGAGAAATAGCTTCCAATTTCGTCTCATGCAATCCCTTCTTCACCGTCTTCATAAAACCTTGTCATGAGAGACAATATCGTCTGTGCGTACCAGATTTGAAAGACATTATTGGGAGCAAGAAGTGTGCGGTGCTACAACTTGGGGAAAGATCTTGGAAAGTAAAGTTGTTACACAGTACCGAACGTTTTCGACAATACAGGTTCGGTGCTGGCTATTACTTATTTTCGAGTGAGAGTGAATTGCAATCTGGAGATGTTTGTGTATTTGAACTGATTAGCACAAAGGATTGTGTTTTTAAAGTTCATGTTTTCAAAATCGATCACTGA 861 0.4007 MASQILRTDATLPIFFFKVILKTNLERLKIPNKFTRKYGDGLPNPLLMKLSNGTAWEVKWAKHNREVWLEKGWKEFVQHYSLDHGHLVCFKYEGTSQIHVIIFDQSAVEIDYFCGTDDENDNLVQTEDTADENDNLVQTEDKPNMILDEETQQKAEQIGGENYAQRTSSLNWPTQTRAREIASNFVSCNPFFTVFIKPCHERQYRLCVPDLKDIIGSKKCAVLQLGERSWKVKLLHSTERFRQYRFGAGYYLFSSESELQSGDVCVFELISTKDCVFKVHVFKIDH 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00193 286 CDD B3_DNA 191 283 IPR003340 GO:0003677
Vian3g00193 286 SMART B3_2 191 285 IPR003340 GO:0003677
Vian3g00193 286 SMART B3_2 16 106 IPR003340 GO:0003677
Vian3g00193 286 CDD B3_DNA 15 104 IPR003340 GO:0003677
Vian3g00193 286 ProSiteProfiles B3 DNA-binding domain profile. 228 285 IPR003340 GO:0003677
Vian3g00193 286 Gene3D - 11 107 IPR015300 -
Vian3g00193 286 SUPERFAMILY DNA-binding pseudobarrel domain 14 106 IPR015300 -
Vian3g00193 286 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Vian3g00193 286 PANTHER B3 DOMAIN-CONTAINING 16 281 - -
Vian3g00193 286 Gene3D - 173 285 IPR015300 -
Vian3g00193 286 Pfam B3 DNA binding domain 23 105 IPR003340 GO:0003677
Vian3g00193 286 Pfam B3 DNA binding domain 199 283 IPR003340 GO:0003677
Vian3g00193 286 SUPERFAMILY DNA-binding pseudobarrel domain 188 284 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00193 Vian-Chr3 1636201 1637417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00193 15 285 B3 DNA Binding Superfamily AT3G18990 28.024 1.22e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian3g00193 B3 7.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00193 - - var:108324817 503.827