Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00192 ATGTTCAAATATGTGGGTATGTCTCGGTTTAAGGTGACCATACTTCATCAAACTGGCTTGGAAATTATGTACCCTTTAAAGGAATCAAATTTAGATAATGCAGAGAATGTTAATGGTAATTCTTCACTACACTTCAAGAAGACAAAATCTTCTTTACCACGTTGTCGTTTTAGCAAGAAGGTGAAAACCAACTGTAGAAACCCACCTAATATCTCTGAAGATGTTACAAATAGAAGTGGTCCATCTCTTAGCATCAAGGAGGAGTTAGATGAACAAAATGCAAATGGTTTTCATAGTACAAAATTCCAAAAAAGAGGTACAAAAAGAAAACCCTCTGCCTGTAATTTTTCAACTAGAAGTGGCACTGCTATGGAGAGAGCTGAATCTTTCCGCTCTGAGAATCCCTTCTTCATTCGTAAAATGCAACCATCATATATTCAAAGACATATGATGGGGGTGCCGAGTAGTTTCGTAACAGAAGCTGAAGAAGATGTGCATGACCGTGTTACTCTTTGGACTTCTGAAAGCAGACCTTGGCATGTTGAATTTTATCGGAATAATAGCAGTAACCAAATAAATTTTACTACTGGATGGAAGAATTTTGTAAAGGATAATAACTTGCGACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTATAATTTTTAGAGACACAGAAGAATCAAGTTCTCCTAGGTTTTCAGGTTATTGGTATTTCTTAAACAGTGCTTACCACTTACAACTGTAA 771 0.3593 MFKYVGMSRFKVTILHQTGLEIMYPLKESNLDNAENVNGNSSLHFKKTKSSLPRCRFSKKVKTNCRNPPNISEDVTNRSGPSLSIKEELDEQNANGFHSTKFQKRGTKRKPSACNFSTRSGTAMERAESFRSENPFFIRKMQPSYIQRHMMGVPSSFVTEAEEDVHDRVTLWTSESRPWHVEFYRNNSSNQINFTTGWKNFVKDNNLRLGDVCVFEKIKKSGISFKVIIFRDTEESSSPRFSGYWYFLNSAYHLQL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00192 256 ProSiteProfiles B3 DNA-binding domain profile. 136 233 IPR003340 GO:0003677
Vian3g00192 256 Gene3D - 117 235 IPR015300 -
Vian3g00192 256 SMART B3_2 137 233 IPR003340 GO:0003677
Vian3g00192 256 CDD B3_DNA 135 231 IPR003340 GO:0003677
Vian3g00192 256 MobiDBLite consensus disorder prediction 94 120 - -
Vian3g00192 256 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 237 IPR044837 -
Vian3g00192 256 Pfam B3 DNA binding domain 136 231 IPR003340 GO:0003677
Vian3g00192 256 SUPERFAMILY DNA-binding pseudobarrel domain 130 231 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00192 Vian-Chr3 1627264 1628215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00192 69 234 REM Transcription Factor Family AT1G49480 28.934 5.92e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian3g00192 B3 1.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00192 - - vum:124838216 473.396