Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00191 ATGTCGTCTGGTGATGGTAATGCCGTTCACTTCTTCAAGAAAATTCATGAAGACACACTTCGAAACGGGGATCTGAGAATACCTCGGAGTTTTGTGATTAAATACTGGCAAGATATATCAAATCCACTGCATCTTCTTCTTCCCAAAGGTGCTGAATGGGAAGTAAAGTGGAGAAAAGTTGGTGCTGACATTTGGTTATTTGATAAATGGAAGAAATTTGCAGAATTTTATTCTTTGGACGAAAATGATCTCTTGATGTTCAAATATGTGGGTATGTCTCGGTTTGAGTTGGTCATACTTCATCAAGCTGGCTTGGAAATTATGTACCCTTTAAAGGAAGCAACTTTAGATAATGCAGAGAATGGTAATGGTAATTCTTCACTACACTTCAAGAAGACAAAATCTTCTTTACCACGTTGTCGTTTTAGCAAGAAGGTGAAAACCAACTGTAGAAACCCACCTAATATCTCTGAAGATGTTACAAATAGAAGTGGTCCATCTCATAGCATCAAGGAGGAGTTAGATGAACAAAATGCAAATGGTTTTCATAGTACAAAATTCCAAAAAAGAGTTACTAAAAGAAAACCTTCTGCCTGTAATTTTTCAACTAGAAGTGGCACTGCTATGGAGAGAGCCGAATCTTTCCGCTCTAAGAATCCCTTCTTCATTCGTAAAATGCAACCATCATATATTCAAAGACATATGATGACGGTGCCGAATAGTTTCATAACAGAAGATGAAGAAGATGAGCATGACGGTGTTACTCTTTGGACATCTGAAAGCAGACCTTGGCATGTTGAATTTTATCGGAATAATAGCAGTAACCAAATAAATTTTACTACTGGATGGAAGAATTTTGTAAAGGATAATAACTTGCGACTAGGGGATGTATGTGTTTTTGAGAAAATCAAGAAATCGGGAATTTCATTCAAAGTTATAATTTTTAGACACAGAGAAGAATCAAGTTCTCCTAGGTTTTCAGATCATTCAATTCCTGAATGCAAAGAAAGGGAGTTAGAGAATCACTTCAGTGTCTGCATCAAACCTAAGGATTTCAATTCTGTGAATCTTCCAAGGGATTTCTTAAAAAATCATGGTATTCGTCATTCAAATGCAGTGATCCTGGAAGTTGGGAAGAAATCATGGAATGTGAAGCTAGACTCTTACTGTAGATCCACCAGTGGTTGGCGTGAATTTATTAGAGAGTGCCAATTGAAGTCTGGAGATATTTGTCTATTCGAGTTGATTGATAAGAAGAAGATGGTGTTTGAAGTTACCATTGTAGTATGCATCGAGTGA 1299 0.368 MSSGDGNAVHFFKKIHEDTLRNGDLRIPRSFVIKYWQDISNPLHLLLPKGAEWEVKWRKVGADIWLFDKWKKFAEFYSLDENDLLMFKYVGMSRFELVILHQAGLEIMYPLKEATLDNAENGNGNSSLHFKKTKSSLPRCRFSKKVKTNCRNPPNISEDVTNRSGPSHSIKEELDEQNANGFHSTKFQKRVTKRKPSACNFSTRSGTAMERAESFRSKNPFFIRKMQPSYIQRHMMTVPNSFITEDEEDEHDGVTLWTSESRPWHVEFYRNNSSNQINFTTGWKNFVKDNNLRLGDVCVFEKIKKSGISFKVIIFRHREESSSPRFSDHSIPECKERELENHFSVCIKPKDFNSVNLPRDFLKNHGIRHSNAVILEVGKKSWNVKLDSYCRSTSGWREFIRECQLKSGDICLFELIDKKKMVFEVTIVVCIE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00191 432 ProSiteProfiles B3 DNA-binding domain profile. 221 318 IPR003340 GO:0003677
Vian3g00191 432 CDD B3_DNA 10 100 IPR003340 GO:0003677
Vian3g00191 432 SUPERFAMILY DNA-binding pseudobarrel domain 215 317 IPR015300 -
Vian3g00191 432 Gene3D - 202 320 IPR015300 -
Vian3g00191 432 Gene3D - 331 431 IPR015300 -
Vian3g00191 432 CDD B3_DNA 357 427 IPR003340 GO:0003677
Vian3g00191 432 PANTHER B3 DOMAIN-CONTAINING 214 423 - -
Vian3g00191 432 SUPERFAMILY DNA-binding pseudobarrel domain 8 110 IPR015300 -
Vian3g00191 432 CDD B3_DNA 220 316 IPR003340 GO:0003677
Vian3g00191 432 SMART B3_2 222 318 IPR003340 GO:0003677
Vian3g00191 432 SMART B3_2 343 431 IPR003340 GO:0003677
Vian3g00191 432 SMART B3_2 11 103 IPR003340 GO:0003677
Vian3g00191 432 Gene3D - 3 104 IPR015300 -
Vian3g00191 432 Pfam B3 DNA binding domain 355 422 IPR003340 GO:0003677
Vian3g00191 432 Pfam B3 DNA binding domain 221 317 IPR003340 GO:0003677
Vian3g00191 432 Pfam B3 DNA binding domain 11 99 IPR003340 GO:0003677
Vian3g00191 432 ProSiteProfiles B3 DNA-binding domain profile. 340 431 IPR003340 GO:0003677
Vian3g00191 432 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Vian3g00191 432 SUPERFAMILY DNA-binding pseudobarrel domain 342 427 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00191 Vian-Chr3 1614576 1616363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00191 220 319 B3 DNA Binding Superfamily AT3G18990 27.000 3.51e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian3g00191 B3 3.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00191 - - vum:124838216 777.319