Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00187 ATGAACATCGTCATGCAAAACTTGGTGGAAAGACTAAGATCCCTTGTGGGTTTGAACGGATGGGATTACTGTATCTACTGGAAATTGAGTGAAGACGAAAGGTTTCTCGAGTGGTTGGGTTGCTGTTGTGGTGGCACCGAAAGCAACAAAAATGCTGGTGAAGAACATCTTTTCCCTGTGTCTTCTGTGGTTTCATGCAGGGATACCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCCATAGATAATTCTGGGATTTATACACAGACCCTATTAACAAACCAACCCAGTTGGGTGAACTATTCCAATAGCTTGGATTCAAGCATTTTGGATGAAACAATGGGGACCCAGGTTTTGATTTCAGCGCCAGGTGGACTAATTGAGCTGTTTGTAACCAAACAATGCATTGAAGCTGTGAACCACTCAATGAGCTTCAACATTGACGTGAATTCAATGAGCAACATGCAACAAAACCCACTTTTAGGCGATGAAAACGAAGGGAACAACAGCAGGAACACTCATTTCCACCCTTCGGATGTCATGACCATGGACCACCGCATCGGCCTGTGCAGTTCTCCACTGAACTTCATGCAGCAGTTCAACTACAATCAGCTGAACAGAATGAAGAGCGATGCCTTTTCTGAAGAATACCAAGGTTCCTTCTTTCATGACAAGCAAACAAACCCTGAAGACGAGCATGACAACACGTATCAGAAAAGCCTCATGACGACAGATTCACAGTACATGGAGTCTCTGGAAGCAAAAGAGAAGCAAGAGGAGGACAAGGAGTTGCTGAAACATGTTGTTGCTCGATCGGATTCAATGTCAGATTGCAGTGAGCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAATCAGTCCAAGAACCTGATGGCCGAGAGGAAGAGAAGGAAGAAGCTGAATGACAGGTTATACAAGCTTCGTTCTTTGGTTCCACGGATCTCAAAGTTGGACAGGGCCTCAATCCTTGGAGATGCTATTGAATACGTAAAGGATTTGCAGAAGCAAGTGAAGGAGCTGCAAGACGAGCTTGAGGAGAATGCAGACACCGAAAGCAACTGCATCAATGGAAATAATGACAACAATAATAATCAATATGTGGGTGTAGGTGAACTATGTCCAAACTCTGAACCTGCTAAGGGCCAATCTGGGTTGCATGTGGGTACCTCAGCGAATGGCTATGTATACAAACAAAAGGAGGATGCAGCATTGATTGAGAAGCAAACCCAGCAAATGGAGCCGCAGGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTATTCTGTGAACACAGGCCTGGTGGGTTTGTGAAATTGATGGAGTCGTTGAACACTATTGGCATGGACGTGGTGCATGCCACGGTAACCAGCCACAAGGGTCTGGTGTCAAATGTTTTTGAAGTCGAGAAAAAAGACAATGAAACTGTCGAAGCCGAAGATGTAAGAGAGTCGCTGCTGGAGCTGACGCGGAACCGTTACAGAGGATGGAGTCATGAGGTGACACCTACGTCGGAGAATGCTGTCGGAAGGGATCAACACCAGATACCATCCTTTTCCCACCATTTTCATACTTAG 1653 0.4543 MNIVMQNLVERLRSLVGLNGWDYCIYWKLSEDERFLEWLGCCCGGTESNKNAGEEHLFPVSSVVSCRDTTYPHPRTKPCDLLSQLSTSIPIDNSGIYTQTLLTNQPSWVNYSNSLDSSILDETMGTQVLISAPGGLIELFVTKQCIEAVNHSMSFNIDVNSMSNMQQNPLLGDENEGNNSRNTHFHPSDVMTMDHRIGLCSSPLNFMQQFNYNQLNRMKSDAFSEEYQGSFFHDKQTNPEDEHDNTYQKSLMTTDSQYMESLEAKEKQEEDKELLKHVVARSDSMSDCSEQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYKLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCINGNNDNNNNQYVGVGELCPNSEPAKGQSGLHVGTSANGYVYKQKEDAALIEKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMESLNTIGMDVVHATVTSHKGLVSNVFEVEKKDNETVEAEDVRESLLELTRNRYRGWSHEVTPTSENAVGRDQHQIPSFSHHFHT 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00187 550 CDD bHLH_AtAMS_like 310 375 - -
Vian3g00187 550 MobiDBLite consensus disorder prediction 530 550 - -
Vian3g00187 550 MobiDBLite consensus disorder prediction 279 318 - -
Vian3g00187 550 SMART finulus 313 362 IPR011598 GO:0046983
Vian3g00187 550 ProSiteProfiles ACT domain profile. 450 522 IPR002912 -
Vian3g00187 550 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 149 IPR025610 -
Vian3g00187 550 Coils Coil 346 376 - -
Vian3g00187 550 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 221 516 - -
Vian3g00187 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 369 IPR036638 GO:0046983
Vian3g00187 550 Gene3D - 295 372 IPR036638 GO:0046983
Vian3g00187 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 356 IPR011598 GO:0046983
Vian3g00187 550 Pfam Helix-loop-helix DNA-binding domain 312 357 IPR011598 GO:0046983
Vian3g00187 550 CDD ACT_UUR-ACR-like 451 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00187 Vian-Chr3 1586864 1589141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00187 5 529 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 44.165 3.78e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g00187 bHLH-MYC_N 2.1e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00187 - - gmx:100798282 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00187 3 1586864 1589141 Vian3g00187 3 1586864 1589141 ECH