Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00178 ATGGGCGTGGCTCAGAATGTTCACGACACGGAGGAGGGTACCTTGGAGATTGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTTATTCTTGACAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTCTCTCTGGATATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAACGGTCCACCAATTTTACCTGAGGCATACCTAGATATTTCTGGAAGTTCTATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTTTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGCGACTTGAGAAATCTGATAATCTACTTGAGAGTGGAGAAGAGGACAATTTTGCTATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGGTCAATGGAGAGAGTGACTCTTTTCCTTAATTTGGCAAACGATCCTACAATTGAGCGAATTATCACTCCTCGTATTGCTCTCACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATACATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAGGGGCGTAAAGGCTCTATTACTCAAATTCCAATTTTAACCATGCCCAACGATGATATTACGCACCCAACTCCTGATCTGACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAACAGACAGATATACCCACCAATCAATGTCCTCCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACCAGAAGGGATCATGCTGATGTTTCCAACCAGCTCTATGCAAATTATGCTATTGGAAAGGATGTTCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCAGAGGACCTGCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCTTACGACACCCGTAATATATTCCAGTCACTAGATCTTGCATGGACCTTACTCCGGATTTTCCCTCGTGAACTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTATTACAGCCGAGATGCTGGTAATTGA 1467 0.4274 MGVAQNVHDTEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLESGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00178 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Vian3g00178 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Vian3g00178 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Vian3g00178 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Vian3g00178 488 CDD V_A-ATPase_B 92 385 - -
Vian3g00178 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Vian3g00178 488 Gene3D - 29 487 - -
Vian3g00178 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Vian3g00178 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Vian3g00178 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Vian3g00178 488 NCBIfam V-type ATPase subunit B 20 486 IPR005723 GO:0033180|GO:0046961|GO:1902600
Vian3g00178 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 485 IPR022879 -
Vian3g00178 488 FunFam V-type proton ATPase subunit B, brain 29 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00178 Vian-Chr3 1467337 1472559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00178 1 488 Primary Pumps ATPases(2) AT4G38510 96.107 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00178 K02147 - gmx:100793764 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00178 3 1467337 1472559 Vian3g00178 3 1467337 1472559 ECH