Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00166 ATGCAATCTATCAGGAAGTCCTTCAAATCTTATGGTTCCTTCAAACAAACAAAAAGGTTTTCCGGCGCCGGAAACCCCGATTCCGACCACGAGCAGCTCCCCATTCTCCTCGACCAAGAAACGCACCGCCACAGCGCAATGCCAGCCGGCGACTACGTCGTTAAAATCGACGATGCCGCCAATCCTACCCAGGCCAACAAGATTTGGCGCGAGTCGAGCTACGACTCATGGAGGGGCGAAGGCTCGTCCTCCGCCGCCAGTGACCAGAGTTTTAATTTCCGGCAGACGGAGGACCCGCCGTCGCAGCTGATAGGGCGGTTCCTCCACAAGCAGCGGGCCTCCGGCGAGATGCAGCTGGACATGGATTTGGAAATGGAGGAGCTCCAGGACGATGCCGGCGAAGGAAGGTTGACGCCGGTGGAGGAGTCTCCGGTGAACTATCGCAATTCCAGGGAGTTGAAGGTCTCCTTCGATGAACCCCTTTCCGATTCGAATCTCCTCGAACAGCAGAACGACCCCTTCAGAAGAAGACACAGTAAAGAATCGTCGACGGTTGAGGAGTCTCCGTTGAACTATCGCAATTCCAGGGAGCTGAAGGTCTCCTTCGATGAACCCCTTTCCAATTCGAATCTCCTCGAACAGCAGAACGACACCTTCAGAAGAAGGCCCAGCAAGGAATCGTCGACGATCGCGGACTTCCAACGCCCTCCGCACCCACCGCAGTACGACCATCGTCGCTCGCCTTCGCCGTCGCCTATTGACGACGGCGAGGTACTTCGGTGCACCTCGAACGCTTCCTTCGAGAGAAACCTCTCAATGCAGAGGAAATCTGCGTTGTTGAAGGCCAAAACGAGATCCAGGTTGCTGGCCCCGCCAGACGAATCCGAGAGAAAATCGAGTCGGGTTATGAAATCGGGTCAGCTCCAGTCTGGGTTTTTAGGGAGGAAGGGTGATGAGGAGGAGGACGATCCGTTTTTGGAAGAGGATCTTCCTGATGAGTTTAAGAAGACTCATTTCAGCTTCTGGATTCTTCTGGAGTGGGTGAGTTTGATTTTGATCATTGGGTTTTTGATAACCACCCTATGCATTCCCTTTCTGAGGGAGATGAATCTGTGGCATCTTAAATTGTGGAAATGGGAGGTTATGGTTCTGGTTTTGATATGTGGGAGATTGGTGTCTGATTGGGTTATTAGGATTGCCGTATTCTGCATTGAGAGGAACTTCCTCTTGAGGAAGAGGGTGTTGTATTTTGTGTACGGTGTGAAGAAAGCTGTTCAGAATTGTGTTTGGTTGGGGCTCGTGTTGATTGCATGGCATTTATTGTTTGACCAGAGGGTGCAGAGGGAGACCAACAGTAATTTCTTGGAGTATGTTAACAAGGTGTTGGTGTGTTTCCTTGTGGGGACTTTGGTATGGTTGCTGAAGACTCTAATGGTTAAGGTGTTGGCCTCTTCTTTCCATGTGAGCACGTACTTTGATAGGATTCAGGAGTCACTGTTTAATCAGTATGTAATTGAGACGCTTTCGGGGCCTCCATTGGTGGAGATTCAGAAGGCTGAAGAGGAGGAGGAGAAGCTTGCTGATGAGGTCCAGCAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAAGGCAACTGCTTTTTCTGATATCAAGAGTGGCAGGTCCAGGAGTGGAGTGCTCAAGAGCCCCAGAGCTAAGAGCGCCAAGTTTTCGCGCCCTCTTTCCAAGGGCTCTGACGATGGTAATGTCATCACCATTGATAACCTCAACAAACTCAACCCCAACAATATCTCTGCCTGGAATATGAAAAGGTTGATGAACATGGTCCGGCATGGGGCTCTTAGCACCTTGGATGAACAGATACTTGATAGCGCCAATGAAGATGAGAACGCCACGCAGATCAGAAGTGAAAACGAGGCAAAATCTGCTGCTAAGAAAATATTTCAAAATGTTGCTAGGCGTGGGTGCAGGTATATATACCCGGATGACTTGATGCGATTTATGCAAGAAGACGAAGCTGCAAAAACCATGAATCTCTTCGAAGGAGCATCTGATTCTGGGAGAATAAGCAAAGCTGCTTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCGCTCGCTTTGACACTAAATGACACAAAAACGGCAGTGAACAAACTTCATCGAATGCTGAATTTTATAGTTGGAATTGTTGTACTGATTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTGTCTTTTTGAGTTCACAGATTGTCTTGGTTACATTTATATTTGGAAACACCTGCAAGACCATATTTGAGGCAATTGTTTTCCTATTTGTCATGCACCCATTTGACGTGGGAGATAGATGTGAAATCGATGGGATTCAGATGATCGTAGAAGAAATGAACATATTGACAACTATATTTCTGAAATACGATAATCATAAGGTGATCATCCCTAACAGTGTCCTTGCTACCAAGGCTATATTTAACTTTTACCGGAGTCCTGACATGCAAGATATTATCGAATTCTACATACATGTATGCACCCCAGTTGAAAAGATTTCACTTATAAAACACAGAATAAACAGTTTCTGTGAAAGCAAGAAGGAGCACTGGTATCCTTCACCTACTGTAGTAGTCAGGGATCATATAGACATACACATGGTGAAAATGGCTATCTGGCCCAGTCATAGAATGAACTTCCAAGATCAGACAGAAAGGCATACCAGGAGATCCATTTTGCTTGAAGAGTTGATTAAGATTTTCAGGGAACTCGACCTTAGTTATCGCCTCTTGCCGCTGGACGTTAACGTCAGAGCCGTGCCTACCTCCTCTGAACGGCTTCCACCTAGTTGGCAATCGATTCCAAGTTGA 2883 0.4752 MQSIRKSFKSYGSFKQTKRFSGAGNPDSDHEQLPILLDQETHRHSAMPAGDYVVKIDDAANPTQANKIWRESSYDSWRGEGSSSAASDQSFNFRQTEDPPSQLIGRFLHKQRASGEMQLDMDLEMEELQDDAGEGRLTPVEESPVNYRNSRELKVSFDEPLSDSNLLEQQNDPFRRRHSKESSTVEESPLNYRNSRELKVSFDEPLSNSNLLEQQNDTFRRRPSKESSTIADFQRPPHPPQYDHRRSPSPSPIDDGEVLRCTSNASFERNLSMQRKSALLKAKTRSRLLAPPDESERKSSRVMKSGQLQSGFLGRKGDEEEDDPFLEEDLPDEFKKTHFSFWILLEWVSLILIIGFLITTLCIPFLREMNLWHLKLWKWEVMVLVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHLLFDQRVQRETNSNFLEYVNKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIQKAEEEEEKLADEVQQLQNAGVTIPPDLKATAFSDIKSGRSRSGVLKSPRAKSAKFSRPLSKGSDDGNVITIDNLNKLNPNNISAWNMKRLMNMVRHGALSTLDEQILDSANEDENATQIRSENEAKSAAKKIFQNVARRGCRYIYPDDLMRFMQEDEAAKTMNLFEGASDSGRISKAALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVGIVVLIIWLLILELATTKFLVFLSSQIVLVTFIFGNTCKTIFEAIVFLFVMHPFDVGDRCEIDGIQMIVEEMNILTTIFLKYDNHKVIIPNSVLATKAIFNFYRSPDMQDIIEFYIHVCTPVEKISLIKHRINSFCESKKEHWYPSPTVVVRDHIDIHMVKMAIWPSHRMNFQDQTERHTRRSILLEELIKIFRELDLSYRLLPLDVNVRAVPTSSERLPPSWQSIPS 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00166 960 Coils Coil 513 539 - -
Vian3g00166 960 MobiDBLite consensus disorder prediction 170 184 - -
Vian3g00166 960 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 177 955 IPR016688 -
Vian3g00166 960 SUPERFAMILY Sm-like ribonucleoproteins 775 834 IPR010920 -
Vian3g00166 960 MobiDBLite consensus disorder prediction 556 578 - -
Vian3g00166 960 MobiDBLite consensus disorder prediction 64 103 - -
Vian3g00166 960 MobiDBLite consensus disorder prediction 115 192 - -
Vian3g00166 960 MobiDBLite consensus disorder prediction 206 258 - -
Vian3g00166 960 MobiDBLite consensus disorder prediction 65 99 - -
Vian3g00166 960 Pfam Mechanosensitive ion channel 727 883 IPR006685 GO:0016020|GO:0055085
Vian3g00166 960 PIRSF Memb_At2g17000 38 960 IPR016688 -
Vian3g00166 960 Gene3D - 785 834 IPR023408 -
Vian3g00166 960 FunFam Predicted mechanosensitive ion channel 785 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00166 Vian-Chr3 1344612 1348346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00166 51 955 Mechanosensitive Ion Channel Family AT1G53470 50.373 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00166 K22048 - gmx:102665658 1441.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00166 3 1344612 1348346 Vian3g00166 3 1344612 1348346 ECH