Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00162 ATGTCAGAGGGCAGTTTGTCCGAGAAGAACAGCGCTCAAGACGAAAACCATGGTGAAAATGGTGGGGTTGGAGTCTCTACCTCTGTTCAAGGTGTGAAAAAAAAGCGTGGCAGAAAGAGTAAAGAGGAAAAGGAGGAGATGGAAAGGAAGTTGTTGGAAGAAAATTTGTTGGAGAAAAATGGTGAAAATAGCAGGGTCGGATATTCTTTTTTTGAAGATGTGAAAAAGGAAACGGAAGAAATGGACAGGAAGAATTCAGACGAAAATTTGTTGGAGAAGAAGGGTGGTCGAGATGTTAGCCACGGTGAAAGGGTTGAGGTAGGTGGTTCTTCTCTTCAAGAAGGCGTGACAGATGGGGGTAATGGCGAGCTTCATGAGAAGAGACCTGTGAGGAAAAGAAAAGTTGTTAAGGAAGGTGGCGGTGAGTTTGAAATACCTGCCGGTTTTTCGGGAAGTGGAAGTGACATTCGGAAACAACACAATATTAGAAACCGTAAAGTCAAAATAGAAGCTGTGATGCCGAAAAAGAATAAGAGGGATAAGGAGTGTATTGAAAATCAATCCAAAATGTGCCATCAATGCCAGAGAAATGATAAAGGCGAGGTTGTGAGGTGCACAAAATGCAAAACCAAAAGATTTTGCATACCCTGTATTAAAAATTGGTATCCTCATTTGAAAGAGGATTACATTGCAGAGGCATGTCCCGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGCGATCCGATGCATTTATTAAAAAAATGAAGGCAAAAACAAGTTCCGTTAAAGATGAGAAGGTTGAGGTCTCTATGTGTTTGCTGCAAGTATTTCTTCCGTATTTAAGATTGTTGGATGAAGAGCAAATGTTTGAGAATGAGATAGAAGCTAAGATACATGGAATCTCAGTCTCAGAGCTTGAAGTAGTACACGCAGATTATTTTAAGGATGAACGTGTATATTGTGACAATTGCAAAACATCAATATTTGATTACCACAGAAGCTGTACAGAATGCTCTTTTGATCTTTGTCTCATGTGTTGCCGTGAACTTCGTAGTGGTCAGCTTGTGGGGGGTGCAGATCCAATTACGTTGGAGTTTCCGTTCAGAGGTCGTGATTACTTGCATGGAAAAATTGTAGATAAAACGGTAAACCAAACTGAACCAAATGATGCTGCTAAGCCTCTAATTCGCGACTGGTCTAGAGCTGTATGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGAATGTAAACATGGTTTTCTTGAACTTAAAAGTGTGTTAGGTCAACATTTTATTACTAATTTATTGTGTAAAGCAAATGGACTGGCACAAACATTGAAGCATGAGACCCCTGACAAATTGTGTTTGTGTTCAAGGCCTGATAGAAGCGGAAATTATGGTATGAGGAAGGCTGCATCCCGTGCAGATTCTGGTGACAATTATTTGTACTGTCCTAACTCTGTACAACTACAGGATGAGGATTTAGGGCATTTTCAGTGGCATTGGGAAAAGGGCGAGCCTGTCATTGTTAGCCATGTGATTGATTGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGAATAATACCAAACATGAGCAACATTTAGATGTAAAGGCAATTGATTGCTTAGATTTCTGCGAGGTAGAAATTAACATCCACCAATTCTTTACTGGGTATACGAAAGCTTTTGGGGATTGGCTTCATTGGCCTCGGATATTGAAGTTAAAAGACTGGCCGCCTTCTAATTTATTTGAGGAACGCTTGCCTAGACATTGTGCTGAGTTCATATCTTCCTTACCATTCAAGGAATATACTGATCCTCTTGGTGGTTGTCTTAACATAGCTGTTAAATTGCCTAAAGAGTGTCTAAAGCCAGACATGGGGCCAAAGACATACATTGCTTATGGATTTCCCCAGGAGCTTGGACGTGGGGACTCAGTTACTAAGCTCCACTGTGACATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTGAACTCAAATTGGATCCCGAGCATCTTAGTGCCATTGACAAGTTGAAACTACAGCACTTTGAGCAAGACAAGAGGGAGCTGCTTAGTGACCGCGATGGAGAAACTAATGTTGACGAAGTAGAAACGGTGCCAGAAAGTGATTCGTCCTTTGCAGGGGATGGTTCGGAAGGTGCTCTGTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTACCTGAGGAAGCATTTTAGAGAGTTTAGGCATATCCATTGCAGTCCTTTAGAGCAGGTTATTCACCCGATCCATGACCAGACATTCTATTTGACCGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCGTTCAGAAGCTTGGAGATGCTGTTTTCATTCCAGCTGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGCTTTCGATTAACAGAGGAATTTCGTACACTTCCCATAAACCATGTGTCTGCTGAGGATAAATTGGAGGTGAAAAAGATGATAATATATGCTATGCAAGATGTGGTAACAAAATTGGAGACGGAAGGATGA 2646 0.4176 MSEGSLSEKNSAQDENHGENGGVGVSTSVQGVKKKRGRKSKEEKEEMERKLLEENLLEKNGENSRVGYSFFEDVKKETEEMDRKNSDENLLEKKGGRDVSHGERVEVGGSSLQEGVTDGGNGELHEKRPVRKRKVVKEGGGEFEIPAGFSGSGSDIRKQHNIRNRKVKIEAVMPKKNKRDKECIENQSKMCHQCQRNDKGEVVRCTKCKTKRFCIPCIKNWYPHLKEDYIAEACPVCRGNCNCKACLRSDAFIKKMKAKTSSVKDEKVEVSMCLLQVFLPYLRLLDEEQMFENEIEAKIHGISVSELEVVHADYFKDERVYCDNCKTSIFDYHRSCTECSFDLCLMCCRELRSGQLVGGADPITLEFPFRGRDYLHGKIVDKTVNQTEPNDAAKPLIRDWSRAVWHAESNGSIPCPKECKHGFLELKSVLGQHFITNLLCKANGLAQTLKHETPDKLCLCSRPDRSGNYGMRKAASRADSGDNYLYCPNSVQLQDEDLGHFQWHWEKGEPVIVSHVIDCTSGLSWEPLVMWRAFRQMNNTKHEQHLDVKAIDCLDFCEVEINIHQFFTGYTKAFGDWLHWPRILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLGGCLNIAVKLPKECLKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAELKLDPEHLSAIDKLKLQHFEQDKRELLSDRDGETNVDEVETVPESDSSFAGDGSEGALWDIFRRQDVPKLQEYLRKHFREFRHIHCSPLEQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHVSAEDKLEVKKMIIYAMQDVVTKLETEG 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00162 881 Coils Coil 40 62 - -
Vian3g00162 881 Gene3D Cupin 484 855 - -
Vian3g00162 881 MobiDBLite consensus disorder prediction 74 128 - -
Vian3g00162 881 Pfam JmjC domain, hydroxylase 734 830 IPR003347 -
Vian3g00162 881 MobiDBLite consensus disorder prediction 705 728 - -
Vian3g00162 881 ProSiteProfiles JmjC domain profile. 618 847 IPR003347 -
Vian3g00162 881 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 879 IPR045109 GO:0032454|GO:0033169
Vian3g00162 881 MobiDBLite consensus disorder prediction 1 48 - -
Vian3g00162 881 Coils Coil 74 94 - -
Vian3g00162 881 SMART cupin_9 599 847 IPR003347 -
Vian3g00162 881 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 186 252 IPR018866 -
Vian3g00162 881 SUPERFAMILY Clavaminate synthase-like 498 870 - -
Vian3g00162 881 ProSiteProfiles Zinc finger RING-type profile. 191 238 IPR001841 -
Vian3g00162 881 MobiDBLite consensus disorder prediction 74 104 - -
Vian3g00162 881 FunFam Transcription factor jumonji domain-containing protein 482 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00162 Vian-Chr3 1297256 1305096 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian3g00162 JmjC 3.9e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00162 K15601 - gmx:112997634 935.25