Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00161 ATGGCGGGCAAAGGGAAAAGCCGACGAGGAAATACAGTCACCATTCCGGTCGATTCAAACCCCACCCTGCAAAATATTCAATCTTTGGATTTTAATGCCGAGTGTGAGGCTGATCAGAGGAAAGCAATCAACTTTACTGAAACAGTTGATGATGGTGTGAAAAGAAAACGTGGCAGAAGAAGTGAAAAGGAGGGCAAGACAACGATGTCCAAGGGCAGTTTGTCCGAGAAGAACAGCGCTCAAGACGAAAACCATGGTGAAAATGGTGGGGTTGGAGTTTCTACCTCTGATCAAGGTGTGAAGAAGAAGCGTGGCAGAAAGAGAAAAAAGGAAAAGGAGGAGATGGAAAGGAAGTTGTTGGAGGAAAATTTGTTGGAGAAAATTGGTGAAAATAGCAGGGTCGGATATTCTTTTTTTGAAGATGTGAAAAAGGAAACGGAAGAAATGGACAGGAAGAATTCAGACGAAAATTTGTTGGAGAAGAAGGGTGGTCGAGATGTTAGCCACGGTGAAAGGGATGTGGTAGGTGGTTCTTCTCTTCAAGAAGGCGTGACAGATGGGGGTAATGGCGAGCTTCATGAGAAGAGACCTGTGAGGAAAAGAAAAGTTGTTAAGGAAGGTGGCGGTGAGTTTGAAATACCTGCCGGTTTTTCGGGAAGTGGAAGTGACATTCGGAAACAACACAATAGTAGAAGCCGTAAAGTCAAAATAGAAGCTGTGATGCCGAAAAAGAATAAGAAGGATAAGGAGTGTATTGAAAATCAATCCAATATGTGCCATCAATGCCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACAAATTGCAAAAGCAAAAGATTTTGCATTCCCTGTATTCAAAATTGGTATCCTCATTTGAAAGAGGATTGCATTGCAGAGGCATGTCCCGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGCGATCTAATGTACTTATTAAAAAAATGAAGGCAAAAACCAGCACCAATAAAGATGAGAAGGTTGAGCTCTCTATGTGTTTGCTGCAAGTACTTCTTCCGTATTTAAGATTGTTGGATGAAGAGCAAAGGATTGAGAATGAGACAGAAGCTAAGATACAGGGAATCTCAGTCTCAGAGCTTGAAGTAGTACACGCAGATTATTTTAAGGATGAACGTGTATATTGTGACAATTGCAAAATTTCAATATTTGATTACCACAGAAGCTGTACGGAATGTTCTTTCTATCTTTGTCTTATCTGTTGCCGTGAACTTCGTAGTGGTCAGCTTGTAGGGGGTGCAGATCCAATTACGTTGGAGTTTCCATTCAGAGGTCGTGATTACTTGCATGGTGGAAATGTAGATAAAACGGTAAATCAAATAGAATCAAATGCTGCTGCTAAGTCTCTAATTCGCGAATGGTCAAGAGCTGGATGGCATGCAGATAGTAATGGTAGCATTCCTTGTCCAAAAGAATGTAACCATGGTTTTCTTGAACTGAGAAGTGTATTAGGTCAACATTTTATTACTGATTTATTGTGTAAAGCAAATGGACTGGAACAAACATTCAAGCATGAGACCCCTGACAAATTGTGTTTGTGTTCAAGGCCTGATAGAAGCGCAAATTATGGTATGAGGAAGGCTGCATCCCGTGCAGATTCTGGTGACAATTATTTGTACTGTCCTAAGGCTGTACAACTACAGGATAAGGATTTAGGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTTAGCCATGTGTTTGATTGTACATCTGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTGCGTCAGATGAATAATACCAAACGTGAACAACATTTATATGGAAAGGCAATTGATTGCTTAGATTTCTGCGAGGTAGAAATTAAGATGCACCAATTCTTTACTGGGTATACGAAAGCTTTTGGGGATTGGCTTCATTGGCCTCGGATATTGAAGTTAAAAGACTGCCCACCTTCTAATTTATTTGAGGAACGCTTGCCTAGACATTTTGCTGAGTTCATATCTTCTTTACCATTCAAGGAATATACTGATCCTTTTGGGGGTTGCCTTAACATAGCTGTTAAATTTGCTAAAGATTGTCCAAAGCCAGACATGGGGCCAAAGACATACATTGCTTATGGATTTCCCCAGGAGCTTGGACGTGGTGACTCAGTGACTAAGCTCCACTGTGATATGTCCGATGTTGTAAATGTGTTGACTCATATTGCTGAACTCAAATTGCAACCTGAGCATCTTAGTGCCATTGACAAGTTGAAACTAAAGCACTTTGAGCAAGACAAGAAGGAACTGCATAGTGATCACGATGGAGAAACTAATGTTGACGAAGTAAAAACGAGGCCAGAAAGTGATTTGTCGTTTGCAGGGGATGGTTCAGAAGGTGCTCTGTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTATCTGATGAAGCATTTTAGAGAGTTTAGGCATATCCATTGCAGTCCTGTAGAGCAGGTTATTCACCCCATCCATGACCAGACATTCTATTTGACCGTGGAGCATAAGAAGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCGTTCAGAAGCTTGGAGATGCTGTTTTCATTCCAGCCGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAAGTTGCATTGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGCTTCCGTTTAACAGAGGAATTTCGTAAACTTCCCATAAGCCATGGGTCTGCTGAGGATAAATTGGAGGTGAAAAAGATGGTAATATATGCTATGCAAGATGTGGTAACAAAATTGGAGAAAAAGCAAGGTTCTTGA 2856 0.4163 MAGKGKSRRGNTVTIPVDSNPTLQNIQSLDFNAECEADQRKAINFTETVDDGVKRKRGRRSEKEGKTTMSKGSLSEKNSAQDENHGENGGVGVSTSDQGVKKKRGRKRKKEKEEMERKLLEENLLEKIGENSRVGYSFFEDVKKETEEMDRKNSDENLLEKKGGRDVSHGERDVVGGSSLQEGVTDGGNGELHEKRPVRKRKVVKEGGGEFEIPAGFSGSGSDIRKQHNSRSRKVKIEAVMPKKNKKDKECIENQSNMCHQCQRNDKGRVVRCTNCKSKRFCIPCIQNWYPHLKEDCIAEACPVCRGNCNCKACLRSNVLIKKMKAKTSTNKDEKVELSMCLLQVLLPYLRLLDEEQRIENETEAKIQGISVSELEVVHADYFKDERVYCDNCKISIFDYHRSCTECSFYLCLICCRELRSGQLVGGADPITLEFPFRGRDYLHGGNVDKTVNQIESNAAAKSLIREWSRAGWHADSNGSIPCPKECNHGFLELRSVLGQHFITDLLCKANGLEQTFKHETPDKLCLCSRPDRSANYGMRKAASRADSGDNYLYCPKAVQLQDKDLGHFQWHWEKGEPVIVSHVFDCTSGLSWEPLVMWRALRQMNNTKREQHLYGKAIDCLDFCEVEIKMHQFFTGYTKAFGDWLHWPRILKLKDCPPSNLFEERLPRHFAEFISSLPFKEYTDPFGGCLNIAVKFAKDCPKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDVVNVLTHIAELKLQPEHLSAIDKLKLKHFEQDKKELHSDHDGETNVDEVKTRPESDLSFAGDGSEGALWDIFRRQDVPKLQEYLMKHFREFRHIHCSPVEQVIHPIHDQTFYLTVEHKKKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRKLPISHGSAEDKLEVKKMVIYAMQDVVTKLEKKQGS 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00161 951 MobiDBLite consensus disorder prediction 769 795 - -
Vian3g00161 951 MobiDBLite consensus disorder prediction 769 790 - -
Vian3g00161 951 MobiDBLite consensus disorder prediction 40 115 - -
Vian3g00161 951 MobiDBLite consensus disorder prediction 143 172 - -
Vian3g00161 951 Coils Coil 103 130 - -
Vian3g00161 951 FunFam Transcription factor jumonji domain-containing protein 550 924 - -
Vian3g00161 951 MobiDBLite consensus disorder prediction 40 70 - -
Vian3g00161 951 Pfam JmjC domain, hydroxylase 802 898 IPR003347 -
Vian3g00161 951 SUPERFAMILY Clavaminate synthase-like 566 939 - -
Vian3g00161 951 Gene3D Cupin 552 923 - -
Vian3g00161 951 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 55 948 IPR045109 GO:0032454|GO:0033169
Vian3g00161 951 SMART cupin_9 667 915 IPR003347 -
Vian3g00161 951 MobiDBLite consensus disorder prediction 143 193 - -
Vian3g00161 951 ProSiteProfiles JmjC domain profile. 686 915 IPR003347 -
Vian3g00161 951 Coils Coil 142 162 - -
Vian3g00161 951 MobiDBLite consensus disorder prediction 1 25 - -
Vian3g00161 951 ProSiteProfiles Zinc finger RING-type profile. 259 306 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00161 Vian-Chr3 1287071 1295138 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian3g00161 JmjC 3.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00161 K15601 - gmx:100780803 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00161 3 1287071 1295138 Vian3g00161 3 1287071 1295138 ECH