Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00159 ATGTTTGTTCCCCTGTTCTGGGAGACTGTTGAATTCCTCTATATATTGGAGAAAACAGCCGTCATCACACCATTCTTCAAAAACTTTACAAACAACAAAGTACAACAAATAAATTTCATGATGTTGACGCATTGCCATGAACTGTTCAAGCCAGTCTCCATCATGATTCTAGTTAACTTGGCTTTGGCTTTTGTCAATTTGCTTATGAAGAAGGTTCTTAATGAAGGAACGGATTACATGTCCATTATAACTTATCGACAGGCAATTTCGTTTATCTTCATGGCACCTATTGCCTTCATCTATGAAAGGAAACACAAAGTGGAAGTTCGCATAATATTTCTCCTTTTCCTCAGTGCCCTACTCGGAGTAACAGTTCCACAAAACCTATTCCTTCTCGGACTTGAATATACTTCAGCTACGTTCTCGTGTGCGTTCCTCAACATGGTGCCTGTATTTACGTTCATTATGGCAGTGCCATTTGGGATAGAGAAGGTGAATGTGCAAAGCAAGGGAGGCAAAGCTAAAGTCATGGGAACTTTTGTGTGCATTGGTGGAGCCTTGTTGTTGGTCCTTTATAAAGGAATGCCCCTTATCAAGCCACAATCTCAATACATAGCTGACAAAGTTACAAGTGTACCTTCAACTGCCAAGTTAGAGACGTGGATTATAGGTTCCATAATTCTGACTGTAAGCTGCCTCCTGTGGTCTTCATGGTTCATCATACAAGCAAAGATTAGCAAAAAATATCCATGTCAATACTCTTGCACAGCTATTTTGTCACTCTTCGCTGCCATTCAATCAGCAATATTAACTCTGATCATCAAGAGAAATAATGCTTCGTGGATTCTTAAAGGAAAGCTAGAAATAATAAGTATTATATATGCTGGATTGGTAGGGTCGGGCTTGTGCTATGTGGCAATGTCATGGTGTGTCAAACAAAGTGGTCCAGTTTTCACCGCCGCTTTTACCCCCCTTATACAGATATTTGTGGCCATCCTTGATTTCTCTGTACTAAAGGAGGAAATTTATCTGGGAAGTGTTGCAGGATCTGCGTTGGTCATTGCTGGTATGTATATTCTTCTGTGGGGAAAAAGCAAAGAGCAAGGACAAGATGTTCAGAAGGATACGCAAACAAATCAAGATGTAGAACGTCAATAG 1158 0.4024 MFVPLFWETVEFLYILEKTAVITPFFKNFTNNKVQQINFMMLTHCHELFKPVSIMILVNLALAFVNLLMKKVLNEGTDYMSIITYRQAISFIFMAPIAFIYERKHKVEVRIIFLLFLSALLGVTVPQNLFLLGLEYTSATFSCAFLNMVPVFTFIMAVPFGIEKVNVQSKGGKAKVMGTFVCIGGALLLVLYKGMPLIKPQSQYIADKVTSVPSTAKLETWIIGSIILTVSCLLWSSWFIIQAKISKKYPCQYSCTAILSLFAAIQSAILTLIIKRNNASWILKGKLEIISIIYAGLVGSGLCYVAMSWCVKQSGPVFTAAFTPLIQIFVAILDFSVLKEEIYLGSVAGSALVIAGMYILLWGKSKEQGQDVQKDTQTNQDVERQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00159 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 263 366 - -
Vian3g00159 385 Pfam EamA-like transporter family 51 190 IPR000620 GO:0016020
Vian3g00159 385 Pfam EamA-like transporter family 223 361 IPR000620 GO:0016020
Vian3g00159 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 85 193 - -
Vian3g00159 385 PANTHER WAT1-RELATED PROTEIN 51 374 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00159 Vian-Chr3 1277005 1278944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00159 47 295 Nodulin-like Gene Family AT3G30340 45.020 5.03e-76 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00159 - - vun:114189567 723.776