Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00131 ATGTTGGATTTAGTTGAGACATCATTGTGTAAATTTGGTATACTGTACAGGAAACTTGATGGTAGGATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTTAAGGCAGGAAACCTTGGATTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCCGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCGGTTACTGTGACAAGGATTACTATTGAAAATACGGTTGAAGATCGGATACTGTCTCTTCAGGAGGAAAAGAGAAGAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTAGTGGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGGTCTAG 435 0.4184 MLDLVETSLCKFGILYRKLDGRMTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDPWWNPTTEDQAIDRAHRIGQTRPVTVTRITIENTVEDRILSLQEEKRRMVASAFGEDHASGSGTRLTVDDLKYLFMV 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00131 144 SMART helicmild6 3 86 IPR001650 -
Vian3g00131 144 Gene3D - 1 143 IPR027417 -
Vian3g00131 144 CDD SF2_C_SNF 1 95 - -
Vian3g00131 144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 143 IPR027417 -
Vian3g00131 144 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 139 IPR001650 -
Vian3g00131 144 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 143 - -
Vian3g00131 144 Pfam Helicase conserved C-terminal domain 7 86 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00131 Vian-Chr3 982246 983315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00131 1 143 RAD5 or RAD16-like Gene Family AT1G61140 71.329 7.43e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00131 - - var:108325721 288.885