Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00118 ATGATGAAGAGAGAAAGAGAAGTTGATAGCGTAACCATGGCCAACTACTTGATGTTGCTTTCTGCAGGAGGTGAATTTGAGAACACGAACTACTTGAACTACTCTTCCAACCACCGTGTGTTTGAGTGCAAGACGTGTAAGAGGCAGTTTCCGTCGTTTCAAGCCTTGGGAGGGCACCGTGCGAGTCACAAGAAACCTAGGTTGATGGTCGGAGAGAGTGAGCATAACCAAGTTCTTCATGGTTCGCCACCAAAACCTAAGACTCATGAGTGTTCTGTCTGTGGTTTGGAGTTTGCGATAGGGCAAGCTTTGGGAGGACACATGAGACGCCATAGAACATCATCAAATGGAAAGATGAACAATGCTACTGCTACCACTGTTCATAATACTTCTTCACCGAAAATGAACCACAAGGGTAGCAGCAACGAGAGAGTTCTGTTTCCTGATCTGAATTTGACGCCATTAGAGAATGATTTGAAGTTTTTGAAGATCAGACAACCAGCTCCTTTGGTTCACTGCTTCAATTGA 528 0.447 MMKREREVDSVTMANYLMLLSAGGEFENTNYLNYSSNHRVFECKTCKRQFPSFQALGGHRASHKKPRLMVGESEHNQVLHGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRTSSNGKMNNATATTVHNTSSPKMNHKGSSNERVLFPDLNLTPLENDLKFLKIRQPAPLVHCFN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00118 175 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vian3g00118 175 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
Vian3g00118 175 SMART c2h2final6 89 111 IPR013087 -
Vian3g00118 175 SMART c2h2final6 41 63 IPR013087 -
Vian3g00118 175 Pfam C2H2-type zinc finger 40 66 - -
Vian3g00118 175 Pfam C2H2-type zinc finger 89 113 - -
Vian3g00118 175 Gene3D Classic Zinc Finger 39 111 - -
Vian3g00118 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vian3g00118 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Vian3g00118 175 PANTHER ZINC FINGER PROTEIN ZAT5 6 158 - -
Vian3g00118 175 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00118 Vian-Chr3 873093 873620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00118 2 162 C2H2 Transcription Factor Family AT2G37430 43.529 1.26e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g00118 zf-C2H2_6 9.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00118 - - gmx:100500316 230.335