Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00114 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGGACCAACAACAGAATAATATCAAGGAAGTTCCTTCATCTTCGAACTCTCTCAAATCTCTTTTGGACGCTGCCGCCCCCACACCCAGATTGTCCAAGCGAGACAAACACCGAAAGCTTCGATCTTCCGAACACCCTCCAAAAGAAGCCAACAAGGAAACTGAAACTGAAACAGAGGGTTCAGCCAATAAGAAAAACAAGAAGAGAAAGAGGAAGGTAGAGGGCGATGACGTGGCAGATGGAGTTCCCGACAACACACCACAGAAAAACAGCAAGAAGAAGAAAAAGAAGAAGAAGCTGAAGAAGAACAAGAAAAAGCCCAAAACCGTGGAGGAAAATGGCTCTAATGGTGGAGGGGAAGTGCCTGAGGCTACAGTGTTAACCAAGACCAATACAACTACCAGTCAAGACAATGGTGATGTTCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGTATTTTCCTGAAAGTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACCGAAGCAGCAGCTAAACGGGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAGCGCGAGCCAATAAAACATCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAGTATATGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAATAATTGTGAGATAACGTCTATTCGATTTGGTATGGATAAGGAGACGGGAGAGTTTCGAGGGTATGCCCATGTGGATTTCGGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCAGTTCCTCTGATGAAAAAACCAGGAATTCGTAACAGCTCGGCAGTTAATGAAGCTAATGGTGATAAATCAACTTCCTCAGGAAGTGGCAAGATGAATGGAGCTGATGGTGATAAATCAAGTTCCACAGTAAGTGGGAAGATGAAGAGAAGGACGTGCTATGAATGTGGTGAGAAAGGACATGGTTTTTCGGAATGTCCTAAGAAACAAACAGGTGCTGCAACTACAACCTAA 1212 0.4241 MVLSNKKLKLKLRAELDQQQNNIKEVPSSSNSLKSLLDAAAPTPRLSKRDKHRKLRSSEHPPKEANKETETETEGSANKKNKKRKRKVEGDDVADGVPDNTPQKNSKKKKKKKKLKKNKKKPKTVEENGSNGGGEVPEATVLTKTNTTTSQDNGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKAARANKTSDFAPEILEGYNRVYVGNLSWDITEEELRKFFNNCEITSIRFGMDKETGEFRGYAHVDFGDSQSLKTALTLDQNVLFGRPVRISCAVPLMKKPGIRNSSAVNEANGDKSTSSGSGKMNGADGDKSSSTVSGKMKRRTCYECGEKGHGFSECPKKQTGAATTT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00114 403 SMART rrm1_1 159 231 IPR000504 GO:0003723
Vian3g00114 403 SMART rrm1_1 254 325 IPR000504 GO:0003723
Vian3g00114 403 MobiDBLite consensus disorder prediction 338 403 - -
Vian3g00114 403 CDD RRM1_PHIP1 160 231 IPR034361 -
Vian3g00114 403 SUPERFAMILY RNA-binding domain, RBD 151 234 IPR035979 GO:0003676
Vian3g00114 403 MobiDBLite consensus disorder prediction 18 37 - -
Vian3g00114 403 Gene3D - 44 244 IPR012677 -
Vian3g00114 403 Gene3D - 249 334 IPR012677 -
Vian3g00114 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 322 IPR000504 GO:0003723
Vian3g00114 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 226 IPR000504 GO:0003723
Vian3g00114 403 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 61 236 - -
Vian3g00114 403 SUPERFAMILY Retrovirus zinc finger-like domains 371 398 IPR036875 GO:0003676|GO:0008270
Vian3g00114 403 MobiDBLite consensus disorder prediction 339 374 - -
Vian3g00114 403 MobiDBLite consensus disorder prediction 377 391 - -
Vian3g00114 403 MobiDBLite consensus disorder prediction 105 120 - -
Vian3g00114 403 MobiDBLite consensus disorder prediction 57 94 - -
Vian3g00114 403 SUPERFAMILY RNA-binding domain, RBD 246 338 IPR035979 GO:0003676
Vian3g00114 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Vian3g00114 403 MobiDBLite consensus disorder prediction 18 139 - -
Vian3g00114 403 ProSiteProfiles Zinc finger CCHC-type profile. 379 394 IPR001878 GO:0003676|GO:0008270
Vian3g00114 403 Gene3D - 350 403 - -
Vian3g00114 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 329 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00114 Vian-Chr3 849112 850697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00114 158 327 Eukaryotic Initiation Factors Gene Family AT2G36660 26.519 3.49e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00114 - - gmx:100814693 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00114 3 849112 850697 Vian3g00114 3 849112 850697 ECH