Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00082 ATGTCATCTCGCATTGTTGCGGACAATTCATTAGCGATCAATAATGTCACCACTCCCTACTTCGACTTAATGGAAATGGACGACCTCACGCGCCGCCCCGCCTCCGCTGAGATGCCCACCCTCGGCCAGCTCCTCAAGCACGTCGGGGACGCCAGGAAGGAAGCCTCCGGCGACGGAAGCGAGACGCCGGTGCATCACGCGCTCGATATAGTTGACGCCGCCGGAGTTGGGCCTCGCTCGCTGCCATTCGTCCTCTCCTTCAGCAACCTCACATACAGCGTCAAGGCGCGCCGCAAAATGAGCCTCTCCTCTGTCTTTCCATGCCGTGGAAGCCGCCTCGGCGCGTCCGCGGTATCCGAGGCTCCTGCCGTCGGCGAGAGCATGTTCAGGCGGACCAAGACGCTCCTTAACGATATCTCCGGCGAGGCGCGCGACGGCGAGATCATGGCGGTACTCGGCGCCAGCGGTTCTGGAAAGTCAACACTGATCGACGCGCTGGCGAACCGAATCGCCAAGGGAAGTCTAAAAGGCACGGTGGCGCTGAACGGCGAAACGCTGGAATCGCGTCTACTGAAGGTGATCTCTGCGTACGTGATGCAAGACGACCTGCTCTTCCCGATGCTCACCGTGGAAGAGACTTTGATGTTCGCAGCGGAATTCAGACTTCCGCGCACGCTCTCCAAGTCGAAGAAAAACGCCCGCGTCCAGGCTCTCATCGAGCAGCTAGGTCTTCGGAACGCCGCGAAAACAGTTATCGGCGACGAAGGTCACCGCGGAGTATCAGGCGGAGAGCGTCGGAGAGTTTCCATCGGCATCGACATTATCCACGACCCTATCCTGCTGTTCCTGGACGAGCCAACCTCGGGACTTGACTCCACCAGCGCGTTCTTGGTGGTGAAGGTTTTGCAGAGAATCGCACAGAGCGGAAGCATCGTGATCATGTCCATTCACCAACCGAGTTACCGAATCCTAGGGCTTCTGGACCGCATGATCTTCTTATCACGGGGCCAAACCGTTTACAGCGGTTCACCGTCGCAGTTACCGGTTTTCTTCTCCGAGTTCGGTCATCCGATTCCGGAAACCGACAACAGAACGGAATTCGCGTTGGACCTGATTCGCGAACTGGAAGGCTCCCCCGGCGGAACGAAGAGCTTGGTCGAGTTCAACAAATCGTGGCAGAGCATGACGAAGCACCATCAAACGACAACTGAGGCGGAACGGAACGGGTTATCGTTGAAGGAAGCAATAAGCGCGAGCATTTCGCGAGGGAAACTGGTTTCTGGAGCCACGAACACGAACCCGAACCCGTCGTCGATGGTGCCAACTTTTGCGAATCCGTTTTGGATTGAGATGGCGACGCTGTCGAAGCGGTCGTTCTTGAACTCGAGAAGAATGCCGGAGTTGTTTGGGATAAGATTGGGTGCGGTGATGGTGACGGGGTTCATTCTTGCGACCATGTTTTGGCAACTGGATAACTCTCCGAAAGGAGTGCAAGAGAGGCTGGGATTCTTCGCCTTTGCCATGTCAACAACTTTCTACACCACTGCCGACGCGCTTCCCGTCTTCCTCCAAGAACGCTACATTTTCATGAGGGAAACTGCTTACAACGCTTACAGAAGAATCTCCTATTTGGTCTCGCATGCGCTGGTTGCGTTGCCGGCACTAACGTTTCTCTCGTTGGCTTTCGCGGCAACCACGTTCTGGGCCGTGGGCCTGGACGGTGGAGTTTCGGGCTTTTTGTTTTATTTCCTGATTATATTTGCGTCGTTTTGGGCTGGGAATTCGTTCGTGACGTTCCTTTCCGGTGTGGTGCCTCACGTGATGCTGGGTTACACCATCGTGGTTGCCATTCTCGCGTATTTCTTGCTGTTCAGTGGATTCTTCATCAACAGGGATAGGATTCCCAGTTACTGGATTTGGTTCCACTACCTGTCACTGGTGAAGTACCCTTATGAAGCTGTTTTGCAGAACGAGTTCGATGACCCAGTGAAGTGCTTCGTGAGGGGGGTACAGATTTTCGATAACACGCCTCTTGGGTCGGTGCCCCAGGCTCTGAAGGTTAAGCTTTTGGACGCCATGAGCAACACTCTCGGAATGAACATTACCACCTCCACCTGTTTGACCACCGGTTCCGACATTTTGCGGCAGAACGGGGTCACCGATTTGACCAAGTGGAACTGCTTGTGGGTCACCGTCGCCTGGGGATTCTTCTTTAGATTCTTGTTCTACTTCTCCCTCTTGCTGGGTAGCAAGAACAAGAGGAGCTGA 2268 0.5507 MSSRIVADNSLAINNVTTPYFDLMEMDDLTRRPASAEMPTLGQLLKHVGDARKEASGDGSETPVHHALDIVDAAGVGPRSLPFVLSFSNLTYSVKARRKMSLSSVFPCRGSRLGASAVSEAPAVGESMFRRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGETLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKNARVQALIEQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFLVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPVFFSEFGHPIPETDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKHHQTTTEAERNGLSLKEAISASISRGKLVSGATNTNPNPSSMVPTFANPFWIEMATLSKRSFLNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRISYLVSHALVALPALTFLSLAFAATTFWAVGLDGGVSGFLFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNTPLGSVPQALKVKLLDAMSNTLGMNITTSTCLTTGSDILRQNGVTDLTKWNCLWVTVAWGFFFRFLFYFSLLLGSKNKRS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00082 755 SMART AAA_5 145 337 IPR003593 GO:0016887
Vian3g00082 755 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 113 360 IPR003439 GO:0005524
Vian3g00082 755 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 66 741 - -
Vian3g00082 755 ProSitePatterns ABC transporters family signature. 260 274 IPR017871 GO:0005524|GO:0016887
Vian3g00082 755 Pfam ABC-2 type transporter 317 377 IPR043926 GO:0140359
Vian3g00082 755 Gene3D - 126 349 IPR027417 -
Vian3g00082 755 FunFam ABC transporter G family member 6 125 351 - -
Vian3g00082 755 Pfam ABC transporter 136 288 IPR003439 GO:0005524
Vian3g00082 755 Pfam ABC-2 type transporter 453 659 IPR013525 GO:0016020|GO:0140359
Vian3g00082 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 347 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00082 Vian-Chr3 640938 643205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00082 135 347 Calmodulin-binding Proteins AT2G36910 29.091 8.40e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00082 K05681 - gmx:100803658 1330.47