Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00064 ATGGCAGCATCTTCAGTGATCGGAGTCATTGATGGGAAGTTTGAAAGTGGGTACATAGTTACAGTGAGAATGGGTTCGGAGACACTGAAAGGTATACTTTATGAAGTGCCACAGCACACTCCATTGCCAACATCCCATCGAAGTAAGAAATCAGACACCAAAAAGAAAGTTCCTGTTCATCCAAAACATAGCAGAAATGGCTACAATTTCTTCTATGCTGAACAGCATGCAACACTGAAGGCACTTCACCAAGGAAAGGAGGGACAGATTCCTAGAATGATCGGTCAACTCTGGTCAAAGTTAAAAGTATCCCAAAAAATGATTTATCAAGAGATGGCTATGAAGGATAAAGAAAGGTACATGGTAGAAATGGAGGATTATTTGGAGAAACTGAAAACGGGTCCAGTTATCACTAATGCTGTGCCACTTCGACAGTGGCCGCCCAAACAGGACACAGACATGTTGGATGAAGTTGAGACTAACAAAGGCAATTCAAGTGGAGAAGACTTGGAAGATGATTTATAA 525 0.4152 MAASSVIGVIDGKFESGYIVTVRMGSETLKGILYEVPQHTPLPTSHRSKKSDTKKKVPVHPKHSRNGYNFFYAEQHATLKALHQGKEGQIPRMIGQLWSKLKVSQKMIYQEMAMKDKERYMVEMEDYLEKLKTGPVITNAVPLRQWPPKQDTDMLDEVETNKGNSSGEDLEDDL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00064 174 SMART hmgende2 60 129 IPR009071 -
Vian3g00064 174 MobiDBLite consensus disorder prediction 145 174 - -
Vian3g00064 174 CDD HMG-box_AtHMGB9-like 61 127 - -
Vian3g00064 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 61 128 IPR009071 -
Vian3g00064 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 164 - -
Vian3g00064 174 MobiDBLite consensus disorder prediction 40 61 - -
Vian3g00064 174 MobiDBLite consensus disorder prediction 150 168 - -
Vian3g00064 174 Pfam HMG (high mobility group) box 61 127 IPR009071 -
Vian3g00064 174 Gene3D High mobility group box domain 44 137 IPR036910 -
Vian3g00064 174 SUPERFAMILY HMG-box 48 134 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00064 Vian-Chr3 503596 505215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00064 1 156 ARID Transcription Factor Family AT1G04880 51.613 1.02e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vian3g00064 HMG_box 1.2e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00064 - - var:108324848 355.91