Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00061 ATGGACGACTACACGAGGGAAATGATGGACCTGAAGACACTGGTCACTCGCACTCTCGAGAAGAAAGGCGTTCTCGCCAGGATCCGTGCCGAACTCAGAGCGAGTGTGTTCGAGGCCATCGAAGAGGAAGATCGTGTGATTGAGAAGGACCAAGGTCTACCTCCTGCATTGCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGGTAGGCTCCTTACGGCCATGATATGTGAGTACCTTTACTGGGCGCAGCTCAATCACACACTAAAAGTATACCTTCCGGAATGTAATTTGGAAAAAGACTTTTGGAAGACGGAGCTTAAGGAGTTTAGTACCAAAAATGGTTTTGATCTCAACAGAAACAGAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTTTTGAAGCTTGAGGTTGTTTTGGGGGGTTTTGGATCCTTCCGGAGCTATTGCAATGATAACATCTTCCCTGGATCTCCAGTCATTGGGGTCATTGACGGGAAATTTGAAAGTAGCTATCTAGTTACTGTCACGATTGGTTCAGAGAAACTCAAAGGAGTACTTTATCAAGCTCCACAGAATCCTATATTGCACGCATCCCATCATAGTGCCCCAGCTAATAATACCAACGCTTCTTCTTCAGTAGGTGTTCATTGTCGGAGACGCAGGAAGAAATCAGAAATAAAAAGAAGAGATCCTGCTCATCCAAAATCTAACAGAAGTGGGTACAATTTCTTCTTTGCTGAACAGCATGCAAGACTAAATGCACTTCACCATGGAAAAGACAGAGAGATTAGTAGGATGATTGATTCGCTTCAAACTCCAGAGGAGAGTAGTTCCGGTGGAAGTGATTATGAAGATTATAATAAATCTGCAGAAAGAGGTTTTGATATAGATTCATTACCTGTAATAGGAATGGGTGCAGAAACAAGCTATTTGGGTTCGGAAGATAAGTCATCCAAAGGGGGTTTGTGA 990 0.4384 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQGLPPALLGSCNDRAKQLHASPPGRLLTAMICEYLYWAQLNHTLKVYLPECNLEKDFWKTELKEFSTKNGFDLNRNRDSPLLLDVLEGFLKLEVVLGGFGSFRSYCNDNIFPGSPVIGVIDGKFESSYLVTVTIGSEKLKGVLYQAPQNPILHASHHSAPANNTNASSSVGVHCRRRRKKSEIKRRDPAHPKSNRSGYNFFFAEQHARLNALHHGKDREISRMIDSLQTPEESSSGGSDYEDYNKSAERGFDIDSLPVIGMGAETSYLGSEDKSSKGGL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00061 329 Gene3D High mobility group box domain 224 277 IPR036910 -
Vian3g00061 329 MobiDBLite consensus disorder prediction 276 291 - -
Vian3g00061 329 MobiDBLite consensus disorder prediction 276 296 - -
Vian3g00061 329 Pfam LisH 77 103 IPR006594 GO:0005515
Vian3g00061 329 SUPERFAMILY HMG-box 229 275 IPR036910 -
Vian3g00061 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 165 278 - -
Vian3g00061 329 MobiDBLite consensus disorder prediction 204 221 - -
Vian3g00061 329 MobiDBLite consensus disorder prediction 204 247 - -
Vian3g00061 329 Gene3D - 59 138 - -
Vian3g00061 329 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00061 Vian-Chr3 487830 490805 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00061 163 277 ARID Transcription Factor Family AT1G04880 66.400 2.13e-32 123