Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00058 ATGGTATCAGCTACAATTAGGCGAATTGTGTCACCCTGTTGGAGACCATCTGATACGGGTGAAATTTCTGGTAGGCATGGAGATTCAAGTGGGCGTGTTGATGGTTTGTTGTGGTACAAAGATTCTGGAAGACATGCGCATGGTGAATTCTCAATGGCAGTTATTCAAGCAAACAAATTGTTGGAGGATCAAAGCCAACTTGAATCTGGCCCCTTGAGCTTAACTGAGGGAACTCCTCTTGCAACTTTTGTTGGTATATACGATGGCCATGGAGGTCCAGAAGCTTCCCGGTTTGTCAATGACAATCTCTTTAAAAATATCAAGACAGAATTTTCTTCTGAAAATGATGGAATGTCAGCTGATGTTGTCCATAAAGCGTTCTTGGCAACTGAAGAAGAATTTCTTTCTCTGGTAGAGAAGCAATGGCTGCATAAGCCCCCTCTAGCGTCAGTTGGATCTTGCTGCTTGATAGGCCTAATATGCTGTGGGGAGCTCTATATTGGAAATGCAGGAGATTCTCGAGCAGTACTAGGTAGAATGGATGAGGCTACAAAAGAGATTAAAGCTATTCAATTATCCGAGGAGCACAATGCTAGCATAGTATCTGTCAGAGAAGAGTTGCGCTCGTTGCATCCTGATGATCCGCAGATAGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAGATTTCAAGATCCATTGGTGATGCCTACCTAAAGAAGGTAGAGTTTAATAGAGCACCATTATTGTCAAAATTTCGACTCCCGGAACCCTTTGAGCAGCCAATCCTTAAAGCTGAACCAGCAATACTGGTACAGAAATTGTGTCCTCAAGATCAGTTTCTCATATTTGCATCAGATGGGTTATGGGAGCATCTGAGCAGTCAAGAAGCAGTTGACATTGTCCAAAGCTGTCCACGCAATGGAGTGGCAAAGAAACTTGTGAAAACAGCACTATGTGAAGCTGCGAAGAAAAGAGAAACGAGATACTCAGACTTGAAAAAGATTGACAGAGGGGTGAGGAGACATTTCCACGATGACATCACTGTTATAGTTTTGTATCTTGATTCAAATTTTTTGGCCCGTGCCAATTCTCGTGTACCCTTGGTTTCTATCAAAGGAGGTGGTGAAAATGGTTATGGTATTGGAATTATAGATGCCTAG 1173 0.4305 MVSATIRRIVSPCWRPSDTGEISGRHGDSSGRVDGLLWYKDSGRHAHGEFSMAVIQANKLLEDQSQLESGPLSLTEGTPLATFVGIYDGHGGPEASRFVNDNLFKNIKTEFSSENDGMSADVVHKAFLATEEEFLSLVEKQWLHKPPLASVGSCCLIGLICCGELYIGNAGDSRAVLGRMDEATKEIKAIQLSEEHNASIVSVREELRSLHPDDPQIVVMKHQVWRVKGLIQISRSIGDAYLKKVEFNRAPLLSKFRLPEPFEQPILKAEPAILVQKLCPQDQFLIFASDGLWEHLSSQEAVDIVQSCPRNGVAKKLVKTALCEAAKKRETRYSDLKKIDRGVRRHFHDDITVIVLYLDSNFLARANSRVPLVSIKGGGENGYGIGIIDA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00058 390 CDD PP2Cc 50 358 IPR001932 -
Vian3g00058 390 PANTHER PROTEIN PHOSPHATASE 39 356 IPR015655 GO:0004722|GO:0006470
Vian3g00058 390 FunFam Phosphatase 2C family protein 38 368 - -
Vian3g00058 390 Gene3D - 38 368 IPR036457 -
Vian3g00058 390 SMART PP2C_4 41 356 IPR001932 -
Vian3g00058 390 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Vian3g00058 390 SUPERFAMILY PP2C-like 58 359 IPR036457 -
Vian3g00058 390 Pfam Protein phosphatase 2C 75 331 IPR001932 -
Vian3g00058 390 ProSiteProfiles PPM-type phosphatase domain profile. 46 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00058 Vian-Chr3 470596 474031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00058 3 380 PP2C-type Phosphatase Gene Family AT3G12620 72.823 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00058 K01102 - gmx:100807559 672.544