Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00051 ATGGCCAACAACTTTAGCACCACCCTCTTCCCTCTCTCGGCTTCAAACGCAGTCCAAAAGAGCGAAGCTTTAACGGTGAAAGGAATGAGCCAGCTTGGGTTGAGCCAAAGGGTCAAGAGTCTCAGAAAAATCTCATTGGCCACGAAAAGAAGAGCAGTGATGTTTCATGGCACTGAAAAAGGGAAGGGCAAAGAGGTTCTGAGGGCTCACTTTTCGGATCTGTCACCAACTTCACTAGATGTTGATGGTGGCGACACTGAGAGCATCTTAAGAAAGAGTCAGATAGTGAGAGAAAAACTGGAAAATGCAGTTTGCAACACTCGCATTGAGGAGAATAATAAGAAAGCCAAGGAAATGCTGCAAGCCAAACTTCTCTCTGCATTCGCTTCTGAAAGTGATGCCGCTGTTGGTGAAACTTCCTCAACACCCCAAAGGGGAAGTTTTTTGAACCATTTTGCTTATCCCTTTCCGAACCGTAGCAGTGCCCATTTTTCGCAGACAGACACAGAGGTTGACAAAAGCATCATCCTTTGTGCAACTCCATTGAGGGTTTGTTTGCCCGGCGAAAGCGTTTATGGGGGGCAGAAGGCGAGAAACGGCAGCGTGGGTGAAGCGGTTGAGGATGTTTGTTGTAGCAGGGGCGATGAGAGCGAATACGACGGTCGGATGCACAGCAATCCGTACAAGAAGAACGGCCCGTACACGTGTCCGAAGTGCGGGTGCGTGTTTGAGACGTCGCAGCGGTTTGCGGCGCACGTGAGTTCGAGGCACTACAGGTACGAGACGAAGAGTGAGAGGAAGAAGAGAATGATGGCGAAAATCCGAAGGAGGAGTCTGCGTCTTGAATGGGAAAACGGTGCACTGAGTGTTGTTGCTGACGATGGTTCTAGAAGAAATAGCAGTGTCTTTGCTCCTGCTGAAGTGAAGATTGAAACTGAGAGTGTTGTGAGGCTTCAGCTTGCTCCTCCTCCTGGATGGCCAAAAATAACTGAAGCTGCTGGAGCTGTCAGAATAAAATTGGAGCCATTAGACAATTGA 1038 0.4884 MANNFSTTLFPLSASNAVQKSEALTVKGMSQLGLSQRVKSLRKISLATKRRAVMFHGTEKGKGKEVLRAHFSDLSPTSLDVDGGDTESILRKSQIVREKLENAVCNTRIEENNKKAKEMLQAKLLSAFASESDAAVGETSSTPQRGSFLNHFAYPFPNRSSAHFSQTDTEVDKSIILCATPLRVCLPGESVYGGQKARNGSVGEAVEDVCCSRGDESEYDGRMHSNPYKKNGPYTCPKCGCVFETSQRFAAHVSSRHYRYETKSERKKRMMAKIRRRSLRLEWENGALSVVADDGSRRNSSVFAPAEVKIETESVVRLQLAPPPGWPKITEAAGAVRIKLEPLDN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00051 345 ProSitePatterns Zinc finger C2H2 type domain signature. 236 257 IPR013087 -
Vian3g00051 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 262 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00051 Vian-Chr3 369787 370824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00051 201 295 C2H2 Transcription Factor Family AT2G18490 47.000 1.03e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g00051 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00051 - - vun:114189574 551.977